Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_O14
         (509 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces ...    29   0.31 
SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr...    26   3.8  
SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pomb...    25   5.0  

>SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 878

 Score = 29.5 bits (63), Expect = 0.31
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -1

Query: 299 LSKCKMLYTKGNNHSTVLIKIITYY 225
           + K K+L  K  NH T++ K++ YY
Sbjct: 1   MEKIKLLNVKTPNHYTIIFKVVAYY 25


>SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 506

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -2

Query: 106 ELKSIFCN*MDELRLLFETDQSD 38
           E   I  N +DEL LL+ETD+ D
Sbjct: 225 ERLDILTNLLDELTLLYETDKFD 247


>SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1328

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -1

Query: 308  EVLLSKCKMLYTKGNNHST 252
            E L+ K K  ++KGN+HST
Sbjct: 1271 ESLIHKSKSKFSKGNHHST 1289


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,906,633
Number of Sequences: 5004
Number of extensions: 34826
Number of successful extensions: 58
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 204242806
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)