Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_O14
         (509 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29378-4|AAA68727.2|  667|Caenorhabditis elegans Temporarily ass...    28   4.5  
Z81457-5|CAB03817.2|  584|Caenorhabditis elegans Hypothetical pr...    27   7.9  

>U29378-4|AAA68727.2|  667|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 197 protein.
          Length = 667

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 16/53 (30%), Positives = 29/53 (54%)
 Frame = -1

Query: 362 DKIG*INANY*LR*SCKKEVLLSKCKMLYTKGNNHSTVLIKIITYYVHGDNQW 204
           DK+G + AN+  +     + + S+C  L+T  +  +T+L  I T YV   N++
Sbjct: 580 DKVGTVVANFNAKWRPAVDSINSECIQLFTNFSLGTTILQTIFTKYVQYINRF 632


>Z81457-5|CAB03817.2|  584|Caenorhabditis elegans Hypothetical
           protein C01G12.7 protein.
          Length = 584

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = -1

Query: 248 LIKIITYYVHGDNQWYLLSVTNCGIYYQ*QTMFEEKKIHFCIS 120
           ++K+    +HGD +  L+  T  GI Y+   +  +  I FCIS
Sbjct: 315 MVKVEGADIHGDRELLLMCCTVFGI-YELSILLPQLLIFFCIS 356


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,246,842
Number of Sequences: 27780
Number of extensions: 188120
Number of successful extensions: 286
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 286
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 286
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 988489374
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)