Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_O13
(582 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 31 0.093
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual 31 0.093
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 31 0.12
SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces pomb... 31 0.16
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar... 29 0.37
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi... 29 0.65
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom... 28 0.87
SPAC2G11.08c |smn1|yab8|SMN family protein Smn1|Schizosaccharomy... 27 1.5
SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|c... 27 2.0
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 27 2.0
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 27 2.0
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 2.0
SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 27 2.6
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 27 2.6
SPBC19G7.10c |||topoisomerase associated protein |Schizosaccharo... 27 2.6
SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 27 2.6
SPBC12C2.09c |||Haemolysin-III family protein|Schizosaccharomyce... 26 3.5
SPAC23G3.04 |||DUF1711 family protein|Schizosaccharomyces pombe|... 26 3.5
SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr... 26 4.6
SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc... 26 4.6
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 4.6
SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces ... 26 4.6
SPBC530.13 |||cyclin Ctk2|Schizosaccharomyces pombe|chr 2|||Manual 25 6.1
SPBC106.07c |||N alpha-acetyltransferase Nat2 |Schizosaccharomyc... 25 6.1
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces... 25 6.1
SPAC30C2.08 |||conserved fungal protein|Schizosaccharomyces pomb... 25 8.1
SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pomb... 25 8.1
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc... 25 8.1
SPBC13E7.08c |||RNA polymerase II associated Paf1 complex |Schiz... 25 8.1
>SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 751
Score = 31.5 bits (68), Expect = 0.093
Identities = 18/69 (26%), Positives = 33/69 (47%)
Frame = +1
Query: 370 SPLPDTDKTLTEAPPTTPDQNENELSAADNADAESTKSEETVASTDSDVPLKSTNELDKR 549
SP + L +AP TP++ E + +N D + K E + SD+ K++ +
Sbjct: 473 SPTKSSASPLVKAPKETPERLCTENQSTENEDQANLKESE-LPKEKSDIQPKNSRSTIEY 531
Query: 550 VQLVTRLME 576
++ TR+ E
Sbjct: 532 IETSTRVYE 540
>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1489
Score = 31.5 bits (68), Expect = 0.093
Identities = 17/73 (23%), Positives = 35/73 (47%)
Frame = +1
Query: 100 FFSRDNTENFITFCRELGVHENLLFESDDLVLHNQPRQVILCLLEVARLATKFEVEPPGL 279
F DN F+ F +G+ E FE D+ +VI C+ ++ + ++ PP L
Sbjct: 98 FRHSDNINKFLDFIHGIGLPEIFHFELTDIYEGKNLPKVIYCIHALSYFLSMQDLAPP-L 156
Query: 280 VQLEKEIALEERD 318
++ ++ ++ + D
Sbjct: 157 IKSDENLSFTDED 169
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 31.1 bits (67), Expect = 0.12
Identities = 20/70 (28%), Positives = 30/70 (42%)
Frame = +1
Query: 325 LDSAMSSAAWQFRDISPLPDTDKTLTEAPPTTPDQNENELSAADNADAESTKSEETVAST 504
L SA S+ A +PL + T + +TP + N +A + T T A++
Sbjct: 425 LSSANSTTATSASS-TPLSSVNSTTATSASSTPLSSVNSTTATSASSTPLTSVNSTTATS 483
Query: 505 DSDVPLKSTN 534
S PL S N
Sbjct: 484 ASSTPLTSVN 493
Score = 30.3 bits (65), Expect = 0.21
Identities = 20/72 (27%), Positives = 31/72 (43%)
Frame = +1
Query: 319 SGLDSAMSSAAWQFRDISPLPDTDKTLTEAPPTTPDQNENELSAADNADAESTKSEETVA 498
S + SA S+ A +PL + T + +TP + N +A + T T A
Sbjct: 325 SSVSSANSTTATSTSS-TPLSSVNSTTATSASSTPLTSVNSTTATSASSTPLTSVNSTSA 383
Query: 499 STDSDVPLKSTN 534
++ S PL S N
Sbjct: 384 TSASSTPLTSAN 395
Score = 29.5 bits (63), Expect = 0.37
Identities = 17/68 (25%), Positives = 29/68 (42%)
Frame = +1
Query: 331 SAMSSAAWQFRDISPLPDTDKTLTEAPPTTPDQNENELSAADNADAESTKSEETVASTDS 510
S+++S +PL + T + +TP + N +A + T T A++ S
Sbjct: 442 SSVNSTTATSASSTPLSSVNSTTATSASSTPLTSVNSTTATSASSTPLTSVNSTSATSAS 501
Query: 511 DVPLKSTN 534
PL S N
Sbjct: 502 STPLTSAN 509
Score = 28.3 bits (60), Expect = 0.87
Identities = 14/55 (25%), Positives = 24/55 (43%)
Frame = +1
Query: 370 SPLPDTDKTLTEAPPTTPDQNENELSAADNADAESTKSEETVASTDSDVPLKSTN 534
+PL + T + +TP + N +A + + T A++ S PL S N
Sbjct: 423 TPLSSANSTTATSASSTPLSSVNSTTATSASSTPLSSVNSTTATSASSTPLTSVN 477
>SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 840
Score = 30.7 bits (66), Expect = 0.16
Identities = 19/86 (22%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
Frame = +1
Query: 301 ALEERDSGLDSAMSSAAWQFRDISPLPDTDKTLTEAPPTTPDQNENELSAADNADAESTK 480
A+E DS +S+ +A + + + + D T T + T + + +N D
Sbjct: 754 AIEAYDSQNESSQENATYTVVESNGNANGDNTATNSQGATDNGQTTTNTTQNNVDNTQAT 813
Query: 481 SEETVASTDS-DVPLKSTNELDKRVQ 555
++ T A+TD+ V + + +D ++Q
Sbjct: 814 TDNTQANTDNMQVAIDYSQNMDGQIQ 839
>SPAC26A3.09c |rga2||GTPase activating protein
Rga2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1275
Score = 29.5 bits (63), Expect = 0.37
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = -3
Query: 319 SRVPQARSPSRVAPNPAAPPRISSQASPPPGGKGS 215
S VP +P+R +P PP SS +P P K S
Sbjct: 404 SNVPAYSTPARPTESPPPPPISSSSTTPRPDDKPS 438
>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 451
Score = 28.7 bits (61), Expect = 0.65
Identities = 18/68 (26%), Positives = 34/68 (50%)
Frame = +1
Query: 307 EERDSGLDSAMSSAAWQFRDISPLPDTDKTLTEAPPTTPDQNENELSAADNADAESTKSE 486
E G DS+ SS++ + S D D + + + + +E+ S++ ++D+ES S
Sbjct: 156 ESSSEGSDSSSSSSSSESESSSE--DNDSSSSSSDSESESSSEDSDSSSSSSDSESESSS 213
Query: 487 ETVASTDS 510
E S+ S
Sbjct: 214 EGSDSSSS 221
Score = 27.1 bits (57), Expect = 2.0
Identities = 21/79 (26%), Positives = 38/79 (48%)
Frame = +1
Query: 307 EERDSGLDSAMSSAAWQFRDISPLPDTDKTLTEAPPTTPDQNENELSAADNADAESTKSE 486
E G DS+ SS++ + S D D + + + + +E+ S++ ++D+ES S
Sbjct: 210 ESSSEGSDSSSSSSSSESESSSE--DNDSSSSSSDSESESSSEDSDSSSSSSDSESESS- 266
Query: 487 ETVASTDSDVPLKSTNELD 543
S DSD S++ D
Sbjct: 267 ----SKDSDSSSNSSDSED 281
Score = 25.4 bits (53), Expect = 6.1
Identities = 19/82 (23%), Positives = 40/82 (48%), Gaps = 6/82 (7%)
Frame = +1
Query: 307 EERDSGLDSAMSSAAWQFRDISPLPDTDKTLTEAPPTTPDQNENELSAADNADAE----- 471
E S D+ SS++ S D+D + + + + +++ S+++++D+E
Sbjct: 226 ESESSSEDNDSSSSSSDSESESSSEDSDSSSSSSDSESESSSKDSDSSSNSSDSEDDSSS 285
Query: 472 -STKSEETVASTDSDVPLKSTN 534
S+ SE +S DSD S++
Sbjct: 286 DSSDSESESSSEDSDSTSSSSD 307
>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 204
Score = 28.3 bits (60), Expect = 0.87
Identities = 16/51 (31%), Positives = 23/51 (45%)
Frame = -3
Query: 355 ARLRWTWPNRGRSRVPQARSPSRVAPNPAAPPRISSQASPPPGGKGSPDAA 203
A+ +W P RG + +P S AP PP S+ A+P + AA
Sbjct: 34 AKPQWECPVRGLT-IPPPPSVDHSAPPSGPPPSYSNSAAPATPAASASSAA 83
>SPAC2G11.08c |smn1|yab8|SMN family protein Smn1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 152
Score = 27.5 bits (58), Expect = 1.5
Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Frame = +1
Query: 286 LEKEIALEERDSGLDSA-MSSAAWQFRDISPLPDTDKTLTEAPPTTPDQNENELSAADNA 462
+E + + + DS LD + SAA IS L + ++ + + TT + + + ADN
Sbjct: 31 IEAKGGVSDPDSRLDGEKLISAARTEESISKLEEGEQMINQQTETTLEGDTHIQQFADNK 90
Query: 463 DAESTKSEETVASTDSD 513
K E A T +
Sbjct: 91 GLSDEKPETRAAETHQE 107
>SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 367
Score = 27.1 bits (57), Expect = 2.0
Identities = 14/40 (35%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Frame = +1
Query: 397 LTEAPPTTPDQNENELSAADNADAESTKSE-ETVASTDSD 513
+TE +P+ +NEL +NAD++S +S E++ DS+
Sbjct: 45 VTENGNDSPEAFKNELDNRNNADSQSLQSSTESLFKADSE 84
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 27.1 bits (57), Expect = 2.0
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -3
Query: 286 VAPNPAAPPRISSQASPPP 230
V P AAPP++S+ PPP
Sbjct: 1692 VRPQSAAPPQMSAPTPPPP 1710
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 27.1 bits (57), Expect = 2.0
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = -3
Query: 331 NRGRSRVPQARSPSRVAPNPAAPPRISSQAS-P-PPGGKGSP 212
NRG+ + S S + P P PPR ++ S P PP G+ +P
Sbjct: 321 NRGKPPIGNGSSNSSLPP-PPPPPRSNAAGSIPLPPQGRSAP 361
Score = 27.1 bits (57), Expect = 2.0
Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Frame = -3
Query: 334 PNRGRSRVPQARSPSRVAPN-PAAPPRISSQASP--PPGGKGS 215
P+ GR P S SR N PA PP I +++P PP G S
Sbjct: 370 PSTGRQ--PPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNAS 410
Score = 25.0 bits (52), Expect = 8.1
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 6/33 (18%)
Frame = -3
Query: 313 VPQARSPSRV------APNPAAPPRISSQASPP 233
+P +R P RV AP P PP + +SPP
Sbjct: 236 IPSSRPPERVPSLSAPAPPPIPPPSNGTVSSPP 268
Score = 25.0 bits (52), Expect = 8.1
Identities = 26/86 (30%), Positives = 30/86 (34%)
Frame = -3
Query: 463 PRCPPLIIHSHSDLVL*GAPPLRSCLYRAKVICPETARLRWTWPNRGRSRVPQARSPSRV 284
P PP I S L PPL + + P L P +P + PS
Sbjct: 388 PPAPPPAIPGRSAPAL---PPLGNASRTSTPPVPTPPSL----PPSAPPSLPPSAPPSLP 440
Query: 283 APNPAAPPRISSQASPPPGGKGSPDA 206
PAAPP S PP G P A
Sbjct: 441 MGAPAAPPLPPSAPIAPPLPAGMPAA 466
Score = 25.0 bits (52), Expect = 8.1
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -3
Query: 298 SPSRVAPNPAAPPRISSQASPPPGGKGSPDA 206
+P A PAAPP + +PPP +P A
Sbjct: 456 APPLPAGMPAAPPLPPAAPAPPPAPAPAPAA 486
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 27.1 bits (57), Expect = 2.0
Identities = 20/71 (28%), Positives = 29/71 (40%)
Frame = +1
Query: 331 SAMSSAAWQFRDISPLPDTDKTLTEAPPTTPDQNENELSAADNADAESTKSEETVASTDS 510
S+ SSA+ SPLP T + T + P + LS T + +ST
Sbjct: 93 SSTSSASTTGSSSSPLPSTSTSCTTSTSIPPTGGSSSLSTPITPTVPPT----STSSTSI 148
Query: 511 DVPLKSTNELD 543
+P ST+ D
Sbjct: 149 PIPPTSTSSTD 159
>SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 647
Score = 26.6 bits (56), Expect = 2.6
Identities = 25/86 (29%), Positives = 37/86 (43%), Gaps = 4/86 (4%)
Frame = +1
Query: 262 VEPPGLVQLEKEIALEERDSGLDSAMSSAAWQFRDISPLPDTDKTLTEAPPTTPDQN--- 432
++ PG Q E ++ D L+ SSA + + T T A PTT +N
Sbjct: 94 LQEPGFTQTIVEKDADQVDEPLEPIASSALGTVEPPTDNKPSASTST-AVPTTEARNTSI 152
Query: 433 -ENELSAADNADAESTKSEETVASTD 507
E S + ++ + STKS T S D
Sbjct: 153 TEPANSPSSSSSSASTKSTATTQSAD 178
Score = 25.8 bits (54), Expect = 4.6
Identities = 22/90 (24%), Positives = 35/90 (38%), Gaps = 2/90 (2%)
Frame = +1
Query: 289 EKEIALEERDSGLDSAMSSAAWQFRDISP-LPDTDKTLTEAPPTTPDQNENELSAADNAD 465
E+ + ++ + S + A D+ + T K P T P ++EN + A
Sbjct: 383 EQPVRAQQPEQYESSVVQEATETVTDVGKGVSSTVKNEVNVPSTIPTESENPV-AVGGTT 441
Query: 466 AESTKSEETVASTDSDVPL-KSTNELDKRV 552
AE E A T++ K T KRV
Sbjct: 442 AEHPVQEAVTAPTETAHDFSKETTTASKRV 471
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 26.6 bits (56), Expect = 2.6
Identities = 16/50 (32%), Positives = 19/50 (38%)
Frame = -3
Query: 334 PNRGRSRVPQARSPSRVAPNPAAPPRISSQASPPPGGKGSPDAADYGVQD 185
PN S P + PS AP + P + PPP AAD D
Sbjct: 161 PNSMVSPPPSFQPPSAAAPATSLPSDYNPPPPPPPPPAVEDQAADANEPD 210
>SPBC19G7.10c |||topoisomerase associated protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 744
Score = 26.6 bits (56), Expect = 2.6
Identities = 12/36 (33%), Positives = 15/36 (41%)
Frame = -3
Query: 310 PQARSPSRVAPNPAAPPRISSQASPPPGGKGSPDAA 203
P PS+ PNP P + Q P G +P A
Sbjct: 241 PNMVHPSQAIPNPVMQPSLVPQMPYPQNGMYNPSVA 276
>SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 529
Score = 26.6 bits (56), Expect = 2.6
Identities = 21/90 (23%), Positives = 42/90 (46%)
Frame = +1
Query: 268 PPGLVQLEKEIALEERDSGLDSAMSSAAWQFRDISPLPDTDKTLTEAPPTTPDQNENELS 447
PP + ++ E +++G A + + ISPL DT K+ + A E++ S
Sbjct: 94 PPRQISIDSAKKEETKNTGSTKAADTKSSVEATISPLKDT-KSPSNASVFPIKPTESKTS 152
Query: 448 AADNADAESTKSEETVASTDSDVPLKSTNE 537
D+E+ K E+ +S+ + +T++
Sbjct: 153 T--TKDSETAKEEDDASSSTTKAVEATTSK 180
>SPBC12C2.09c |||Haemolysin-III family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 324
Score = 26.2 bits (55), Expect = 3.5
Identities = 13/48 (27%), Positives = 25/48 (52%)
Frame = +1
Query: 397 LTEAPPTTPDQNENELSAADNADAESTKSEETVASTDSDVPLKSTNEL 540
++E+ Q +++ AA +AD T +A + SD+PL++ L
Sbjct: 1 MSESEQLLEKQQDHKWDAATHADKGITIKTGKIAVSSSDIPLRNRKGL 48
>SPAC23G3.04 |||DUF1711 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 194
Score = 26.2 bits (55), Expect = 3.5
Identities = 15/53 (28%), Positives = 26/53 (49%)
Frame = +1
Query: 334 AMSSAAWQFRDISPLPDTDKTLTEAPPTTPDQNENELSAADNADAESTKSEET 492
++S+ W+ PD+ E P T + NE++AA + AES+ + T
Sbjct: 129 SISTIVWKLPLWIGTPDSIPNTPELPVKTTLDSVNEIAAALSTHAESSPMDAT 181
>SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 568
Score = 25.8 bits (54), Expect = 4.6
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Frame = -3
Query: 313 VPQAR--SPSRVAPNPAAPPRISSQASPPPGGKGSPDA 206
VPQ R + S V+ NPA R+S + S K SP +
Sbjct: 276 VPQKRLNASSNVSSNPAKKTRVSPRRSTAASKKKSPSS 313
>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1063
Score = 25.8 bits (54), Expect = 4.6
Identities = 12/36 (33%), Positives = 16/36 (44%)
Frame = -3
Query: 331 NRGRSRVPQARSPSRVAPNPAAPPRISSQASPPPGG 224
N G P+R+A NP PR+ +Q P G
Sbjct: 95 NAGNVGALPTAGPNRLANNPRVMPRLQNQNVPMQAG 130
>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 262
Score = 25.8 bits (54), Expect = 4.6
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = -3
Query: 334 PNRGRSRVPQARSPSRVAPNPAAPPRISSQASPPPGGKGS 215
P+R SR P + +V P P P + SQ PPP S
Sbjct: 123 PSRPGSR-PSVLNQEQVPPPPVRP-NVMSQMPPPPSYSSS 160
>SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1150
Score = 25.8 bits (54), Expect = 4.6
Identities = 17/58 (29%), Positives = 23/58 (39%)
Frame = +1
Query: 262 VEPPGLVQLEKEIALEERDSGLDSAMSSAAWQFRDISPLPDTDKTLTEAPPTTPDQNE 435
+E G LEK EE GL+S S ++I +P K T + NE
Sbjct: 729 IENSGFTNLEKSFLSEESHCGLESKTDSLV--IKNIQKVPGVAKLYIPLTNTPVEGNE 784
>SPBC530.13 |||cyclin Ctk2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 325
Score = 25.4 bits (53), Expect = 6.1
Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Frame = -1
Query: 387 CIGQR*YVPKLPG-CAGHGRIEAGVAFLKRDLLLELHQTRRLHLEFRRKPRHLQEAKDHL 211
CIG KL G C R + ++ ++ H + L E+R + LQE+K+
Sbjct: 237 CIGNMYTTEKLLGLCVDFQRAQKNSGRPQKPPQIDPHSSS-LADEYRESNKRLQESKESC 295
Query: 210 TRLIME 193
R I++
Sbjct: 296 ARFILD 301
>SPBC106.07c |||N alpha-acetyltransferase Nat2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 167
Score = 25.4 bits (53), Expect = 6.1
Identities = 14/42 (33%), Positives = 18/42 (42%)
Frame = -3
Query: 337 WPNRGRSRVPQARSPSRVAPNPAAPPRISSQASPPPGGKGSP 212
W N R+P R+P+ N ISS +S PP P
Sbjct: 5 WRNLKSVRLPFRRAPTLPLYNVPVRRSISSSSSIPPSSSPPP 46
>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1154
Score = 25.4 bits (53), Expect = 6.1
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = -3
Query: 334 PNRGRSRVPQARSPSRVAPNPAAPPRISSQASPPP 230
P+ R ++ SP+ P P+AP +SS + P
Sbjct: 218 PSNEDQRTMESTSPTDSQPQPSAPNLVSSTENEKP 252
>SPAC30C2.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 457
Score = 25.0 bits (52), Expect = 8.1
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +1
Query: 187 LVLHNQPRQVILCLLEVAR 243
+ +HNQ R V CLLEV R
Sbjct: 360 MAVHNQLRTVKRCLLEVQR 378
>SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1379
Score = 25.0 bits (52), Expect = 8.1
Identities = 14/53 (26%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Frame = +1
Query: 334 AMSSAAWQFRDI-SPLPDTDKTLTEAPPTTPDQNENELSAADNADAESTKSEE 489
+++S+ F++ + L + + +P D++ LSA+ +ADA S+KS++
Sbjct: 661 SLASSKLSFQEAGTSLKEKTANVQHSPEVLNDRSLASLSASRHADAISSKSKQ 713
>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 934
Score = 25.0 bits (52), Expect = 8.1
Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = +1
Query: 382 DTDKTL-TEAPPTTPDQNENELSAADNADAESTKSEETVASTDSDVPLKSTN 534
+ DK + ++ TTPD+ + S + ++ET S D P+K+ N
Sbjct: 80 EDDKLVGSDGVSTTPDEYFEQQSTRSRSKPRIISNKETTTSKDVVHPVKTEN 131
>SPBC13E7.08c |||RNA polymerase II associated Paf1 complex
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 429
Score = 25.0 bits (52), Expect = 8.1
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = +1
Query: 433 ENELSAADNADAESTKSEETVASTDSDVPLKSTNEL 540
EN+ A + D + +EE + ++DVP+K E+
Sbjct: 38 ENDSETAVSDDGLFSNTEEATEAPEADVPVKKVLEV 73
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.313 0.130 0.368
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,091,918
Number of Sequences: 5004
Number of extensions: 39417
Number of successful extensions: 172
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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