Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_O12
         (517 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29B5.03c |rpl26||60S ribosomal protein L26|Schizosaccharomyc...    95   4e-21
SPAC2C4.12c |||tRNA 2'-phosphotransferase Tpt1 |Schizosaccharomy...    27   2.2  
SPCC1442.03 ||SPCC1450.19|ATP-Mg/Pi carrier homolog|Schizosaccha...    26   3.8  
SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D |Schi...    25   5.1  
SPAC23H3.10 |ssr2||SWI/SNF and RSC complex subunit Ssr2|Schizosa...    25   8.9  

>SPBC29B5.03c |rpl26||60S ribosomal protein L26|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 126

 Score = 95.5 bits (227), Expect = 4e-21
 Identities = 49/119 (41%), Positives = 75/119 (63%), Gaps = 4/119 (3%)
 Frame = +1

Query: 49  ARDVSKGKTEEIQCPFSHPTST----YSAPLSKELRQKFNVKSMPIRKDDEVQVVRGHXX 216
           +RDV+  + ++ +  F  P+S      SAPLSKELR+++ ++S+P+R+DD++ V+RG   
Sbjct: 4   SRDVTSSRRKQRKAHFGAPSSVRRVLMSAPLSKELREQYKIRSLPVRRDDQITVIRG-SN 62

Query: 217 XXXXXXXXXXXXXXFVVYIERIQREKANGASVYVGIHPSKCVIVKLKMNKDRKTILDRR 393
                         F++ IER+ REKANGAS  VGI  SK VI KL ++KDRK ++ R+
Sbjct: 63  KGREGKITSVYRKKFLLLIERVTREKANGASAPVGIDASKVVITKLHLDKDRKDLIVRK 121


>SPAC2C4.12c |||tRNA 2'-phosphotransferase Tpt1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 361

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 20/66 (30%), Positives = 32/66 (48%)
 Frame = +1

Query: 1   NRHEVVGEKRQNEVQ*ARDVSKGKTEEIQCPFSHPTSTYSAPLSKELRQKFNVKSMPIRK 180
           N HE++ E   +     +  SK  T++I+ P  +    YS  LSK LR       + IR+
Sbjct: 2   NSHELIEESNNSGTPATKSSSK-PTKKIR-P-RNDLVHYSKALSKVLRHTAKANGLQIRE 58

Query: 181 DDEVQV 198
           D  ++V
Sbjct: 59  DGYIEV 64


>SPCC1442.03 ||SPCC1450.19|ATP-Mg/Pi carrier
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 338

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 19/55 (34%), Positives = 28/55 (50%)
 Frame = -1

Query: 394 LCDPGLFYGLYSSLTSQSHTLKGGYRRTHWLHWLSHAGSFRCRLQTSYGTPVLLC 230
           LC+ G+F+GLYS +      L G    T  L + S+  + R  L ++Y  P  LC
Sbjct: 63  LCEEGVFHGLYSGVCPM---LIGSLPATA-LFFSSYEYTKR-HLMSNYNLPETLC 112


>SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1107

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = -2

Query: 324  DTDVHTGSIGFLTLDPFDVDYKLLTV 247
            DT ++  SIG LT  P +++ KLLT+
Sbjct: 1051 DTLLYAKSIGLLTFLPNELNQKLLTL 1076


>SPAC23H3.10 |ssr2||SWI/SNF and RSC complex subunit
           Ssr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 503

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +1

Query: 55  DVSKGKTEEIQCPFSHPTSTYSAPLSKELRQKF 153
           D+   +  E    F  PT+T  +PLSK+   KF
Sbjct: 466 DLMSTEHAEALLTFEMPTATTVSPLSKQYPDKF 498


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,151,735
Number of Sequences: 5004
Number of extensions: 41955
Number of successful extensions: 127
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)