Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_O12
(517 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0323 - 2459854-2460306 118 4e-27
01_01_0263 + 2136858-2137331 116 1e-26
11_01_0317 - 2365493-2365786,2365825-2365953 83 2e-16
10_07_0125 - 13096520-13097200,13098209-13098898 28 3.9
07_01_0434 - 3302926-3303072,3303402-3303545,3303644-3304293,330... 28 5.1
02_05_0671 - 30769631-30769803,30770535-30770873,30770952-307710... 28 5.1
01_06_1091 + 34464923-34465026,34465124-34465163,34465245-344653... 28 5.1
>12_01_0323 - 2459854-2460306
Length = 150
Score = 118 bits (283), Expect = 4e-27
Identities = 62/107 (57%), Positives = 76/107 (71%)
Frame = +1
Query: 118 SAPLSKELRQKFNVKSMPIRKDDEVQVVRGHXXXXXXXXXXXXXXXXFVVYIERIQREKA 297
SA LS ELR K+NV+S+PIRKDDEVQVVRG +V+++ERI REK
Sbjct: 31 SAALSTELRHKYNVRSIPIRKDDEVQVVRG-SYKGREGKVVQVYRRRWVIHVERITREKV 89
Query: 298 NGASVYVGIHPSKCVIVKLKMNKDRKTILDRRASGRLAALGKDKGKY 438
NG++V VGIHPSK V+ KLK++KDRK ILDR+ASGR A K KGK+
Sbjct: 90 NGSTVNVGIHPSKVVVTKLKLDKDRKAILDRKASGR--AADKAKGKF 134
Score = 28.7 bits (61), Expect = 2.9
Identities = 15/30 (50%), Positives = 21/30 (70%), Gaps = 2/30 (6%)
Frame = +2
Query: 35 MKYNKLVTSPKEKQKR--FSAPSHIRRVLI 118
MK N VTS + K ++ F+APS +RRVL+
Sbjct: 1 MKRNPRVTSSRRKCRKAHFTAPSSVRRVLM 30
>01_01_0263 + 2136858-2137331
Length = 157
Score = 116 bits (279), Expect = 1e-26
Identities = 61/107 (57%), Positives = 75/107 (70%)
Frame = +1
Query: 118 SAPLSKELRQKFNVKSMPIRKDDEVQVVRGHXXXXXXXXXXXXXXXXFVVYIERIQREKA 297
SA LS ELR K+NV+S+PIRKDDEVQVVRG +V+++ERI REK
Sbjct: 31 SAALSSELRHKYNVRSIPIRKDDEVQVVRG-SYKGREGKVVQVYRRRWVIHVERITREKV 89
Query: 298 NGASVYVGIHPSKCVIVKLKMNKDRKTILDRRASGRLAALGKDKGKY 438
NG++V VGIHPSK V+ KLK++KDRK ILDR+A GR A K KGK+
Sbjct: 90 NGSTVNVGIHPSKVVVTKLKLDKDRKAILDRKARGR--AADKAKGKF 134
Score = 28.7 bits (61), Expect = 2.9
Identities = 15/30 (50%), Positives = 21/30 (70%), Gaps = 2/30 (6%)
Frame = +2
Query: 35 MKYNKLVTSPKEKQKR--FSAPSHIRRVLI 118
MK N VTS + K ++ F+APS +RRVL+
Sbjct: 1 MKRNPRVTSSRRKCRKAHFTAPSSVRRVLM 30
>11_01_0317 - 2365493-2365786,2365825-2365953
Length = 140
Score = 82.6 bits (195), Expect = 2e-16
Identities = 54/109 (49%), Positives = 67/109 (61%), Gaps = 2/109 (1%)
Frame = +1
Query: 118 SAPLSKELRQKFNVK--SMPIRKDDEVQVVRGHXXXXXXXXXXXXXXXXFVVYIERIQRE 291
SA LS ELR K+NV S R+ VQV R +V+++ERI RE
Sbjct: 31 SAALSTELRHKYNVVRGSYKGREGKVVQVYRRR----------------WVIHVERITRE 74
Query: 292 KANGASVYVGIHPSKCVIVKLKMNKDRKTILDRRASGRLAALGKDKGKY 438
K NG++V VGIHPSK V+ KLK++KDRK ILDR+ASGR A K KGK+
Sbjct: 75 KVNGSTVNVGIHPSKVVVTKLKLDKDRKAILDRKASGR--AADKAKGKF 121
Score = 28.7 bits (61), Expect = 2.9
Identities = 15/30 (50%), Positives = 21/30 (70%), Gaps = 2/30 (6%)
Frame = +2
Query: 35 MKYNKLVTSPKEKQKR--FSAPSHIRRVLI 118
MK N VTS + K ++ F+APS +RRVL+
Sbjct: 1 MKRNPRVTSSRRKCRKAHFTAPSSVRRVLM 30
>10_07_0125 - 13096520-13097200,13098209-13098898
Length = 456
Score = 28.3 bits (60), Expect = 3.9
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +1
Query: 85 QCPFSHPTSTYSAPLSKELRQKFNV 159
QCP S T T++AP K L+Q+ V
Sbjct: 238 QCPLSRRTFTFAAPAVKLLKQRATV 262
>07_01_0434 -
3302926-3303072,3303402-3303545,3303644-3304293,
3304410-3304493,3304651-3304703,3305127-3305197,
3305285-3305362,3305775-3305903,3305988-3306044,
3306693-3306923,3307748-3307882,3308609-3308684,
3308768-3309024,3309095-3309202,3309328-3309526,
3309600-3309604
Length = 807
Score = 27.9 bits (59), Expect = 5.1
Identities = 21/67 (31%), Positives = 30/67 (44%)
Frame = +1
Query: 1 NRHEVVGEKRQNEVQ*ARDVSKGKTEEIQCPFSHPTSTYSAPLSKELRQKFNVKSMPIRK 180
N EV K Q E Q + +S K + Q H YS +K K N+KS+P +
Sbjct: 309 NPEEVAAMKVQAEQQMSYVISGAKMLKQQGNELHRCEQYSEAAAKYKLAKDNLKSIPSQS 368
Query: 181 DDEVQVV 201
+Q+V
Sbjct: 369 AHSLQLV 375
>02_05_0671 -
30769631-30769803,30770535-30770873,30770952-30771036,
30771229-30771369,30771802-30771873,30772183-30772302,
30772606-30772677,30772758-30772895,30773249-30773320,
30773609-30773685,30773761-30773837,30773960-30774077,
30774852-30774930
Length = 520
Score = 27.9 bits (59), Expect = 5.1
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -1
Query: 424 LYQEPLACH*LCDPGLFYGLYSSLTSQSHTLKGGY 320
L +E + C CDPGL G+ S S S++ Y
Sbjct: 393 LVEELIGCLLKCDPGLSCGIVKSFISPSNSCPSHY 427
>01_06_1091 +
34464923-34465026,34465124-34465163,34465245-34465328,
34465457-34465480,34465582-34465655,34465726-34465812,
34465922-34466006,34466215-34466261,34467048-34467113,
34468307-34468397,34468477-34468548
Length = 257
Score = 27.9 bits (59), Expect = 5.1
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = -1
Query: 391 CDPGLFYGLYSSLTSQSHTLKGGYRRTHWLHWLSHAG 281
C G+ G+ +TS+ L+G RR H +HW H+G
Sbjct: 42 CKDGIVLGVEKLVTSKM-MLEGSNRRIHSVHW--HSG 75
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,915,011
Number of Sequences: 37544
Number of extensions: 275566
Number of successful extensions: 683
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 667
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 681
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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