Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_O12
         (517 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    24   0.81 
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    24   0.81 
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          22   4.3  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      22   4.3  

>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 24.2 bits (50), Expect = 0.81
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +1

Query: 322 IHPSKCVIVKLKMNKDRKTILDRRASG 402
           +HPS+C   K+   +  K +LD    G
Sbjct: 16  LHPSRCTQGKVNYREKEKEVLDNILGG 42


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 24.2 bits (50), Expect = 0.81
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +1

Query: 322 IHPSKCVIVKLKMNKDRKTILDRRASG 402
           +HPS+C   K+   +  K +LD    G
Sbjct: 16  LHPSRCTQGKVNYREKEKEVLDNILGG 42


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -2

Query: 285 LDPFDVDYKLLTVHLYYFAHLLAFIMSSYNLH 190
           LD F  D +L   + YY   +L + MSS   H
Sbjct: 221 LDYFMEDVEL-NAYYYYMREMLPYWMSSSQYH 251


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -2

Query: 285 LDPFDVDYKLLTVHLYYFAHLLAFIMSSYNLH 190
           LD F  D +L   + YY   +L + MSS   H
Sbjct: 221 LDYFMEDVEL-NAYYYYMREMLPYWMSSSQYH 251


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,576
Number of Sequences: 438
Number of extensions: 3000
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)