Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_O11
(557 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC104793-1|AAI04794.1| 594|Homo sapiens nucleolar protein 5A pr... 35 0.17
BC104791-1|AAI04792.1| 594|Homo sapiens nucleolar protein 5A (5... 35 0.17
BC004937-1|AAH04937.1| 174|Homo sapiens NOL5A protein protein. 35 0.17
AL049712-4|CAC01444.2| 594|Homo sapiens nucleolar protein 5A (5... 35 0.17
Y12065-1|CAA72789.1| 602|Homo sapiens hNop56 protein. 35 0.22
Y00067-1|CAA68276.1| 916|Homo sapiens NF-M protein. 33 0.90
EF560736-1|ABQ59046.1| 916|Homo sapiens NEFM protein protein. 33 0.90
BC096757-1|AAH96757.1| 916|Homo sapiens neurofilament, medium p... 33 0.90
AF181990-1|AAF00492.1| 260|Homo sapiens neurofilament-3 (150 kD... 33 0.90
EF560737-1|ABQ59047.1| 877|Homo sapiens NEFM protein protein. 31 3.6
BC005342-1|AAH05342.1| 282|Homo sapiens nucleosomal binding pro... 29 8.4
AL391294-1|CAI39708.1| 282|Homo sapiens nucleosomal binding pro... 29 8.4
AF250330-1|AAK14063.1| 282|Homo sapiens nucleosomal binding pro... 29 8.4
AF250329-1|AAK14062.1| 282|Homo sapiens nucleosomal binding pro... 29 8.4
>BC104793-1|AAI04794.1| 594|Homo sapiens nucleolar protein 5A
protein.
Length = 594
Score = 35.1 bits (77), Expect = 0.17
Identities = 22/77 (28%), Positives = 33/77 (42%)
Frame = +2
Query: 107 MADAAVEKQDAAPEEVTSTEVKESPIKKSPTKKTEVPESNGKENGTXXXXXXXXXXXXNG 286
+A A+ E + PEE E+ E P KK K EVP+ NG E+ + +
Sbjct: 457 LALASSENSSSTPEECE--EMSEKPKKKKKQKPQEVPQENGMEDPSISFSKPKKKKSFSK 514
Query: 287 DAEESNDATENGDVTEV 337
+ S+D E T +
Sbjct: 515 EELMSSDLEETAGSTSI 531
>BC104791-1|AAI04792.1| 594|Homo sapiens nucleolar protein 5A
(56kDa with KKE/D repeat) protein.
Length = 594
Score = 35.1 bits (77), Expect = 0.17
Identities = 22/77 (28%), Positives = 33/77 (42%)
Frame = +2
Query: 107 MADAAVEKQDAAPEEVTSTEVKESPIKKSPTKKTEVPESNGKENGTXXXXXXXXXXXXNG 286
+A A+ E + PEE E+ E P KK K EVP+ NG E+ + +
Sbjct: 457 LALASSENSSSTPEECE--EMSEKPKKKKKQKPQEVPQENGMEDPSISFSKPKKKKSFSK 514
Query: 287 DAEESNDATENGDVTEV 337
+ S+D E T +
Sbjct: 515 EELMSSDLEETAGSTSI 531
>BC004937-1|AAH04937.1| 174|Homo sapiens NOL5A protein protein.
Length = 174
Score = 35.1 bits (77), Expect = 0.17
Identities = 22/77 (28%), Positives = 33/77 (42%)
Frame = +2
Query: 107 MADAAVEKQDAAPEEVTSTEVKESPIKKSPTKKTEVPESNGKENGTXXXXXXXXXXXXNG 286
+A A+ E + PEE E+ E P KK K EVP+ NG E+ + +
Sbjct: 37 LALASSENSSSTPEECE--EMSEKPKKKKKQKPQEVPQENGMEDPSISFSKPKKKKSFSK 94
Query: 287 DAEESNDATENGDVTEV 337
+ S+D E T +
Sbjct: 95 EELMSSDLEETAGSTSI 111
>AL049712-4|CAC01444.2| 594|Homo sapiens nucleolar protein 5A
(56kDa with KKE/D repeat) protein.
Length = 594
Score = 35.1 bits (77), Expect = 0.17
Identities = 22/77 (28%), Positives = 33/77 (42%)
Frame = +2
Query: 107 MADAAVEKQDAAPEEVTSTEVKESPIKKSPTKKTEVPESNGKENGTXXXXXXXXXXXXNG 286
+A A+ E + PEE E+ E P KK K EVP+ NG E+ + +
Sbjct: 457 LALASSENSSSTPEECE--EMSEKPKKKKKQKPQEVPQENGMEDPSISFSKPKKKKSFSK 514
Query: 287 DAEESNDATENGDVTEV 337
+ S+D E T +
Sbjct: 515 EELMSSDLEETAGSTSI 531
>Y12065-1|CAA72789.1| 602|Homo sapiens hNop56 protein.
Length = 602
Score = 34.7 bits (76), Expect = 0.22
Identities = 22/77 (28%), Positives = 32/77 (41%)
Frame = +2
Query: 107 MADAAVEKQDAAPEEVTSTEVKESPIKKSPTKKTEVPESNGKENGTXXXXXXXXXXXXNG 286
+A A+ E + PEE T E P KK K EVP+ NG E+ + +
Sbjct: 465 LALASSENSSSTPEECEETS--EKPKKKKKQKPQEVPQENGMEDPSISFSKPKKKKSFSK 522
Query: 287 DAEESNDATENGDVTEV 337
+ S+D E T +
Sbjct: 523 EELMSSDLEETAGSTSI 539
>Y00067-1|CAA68276.1| 916|Homo sapiens NF-M protein.
Length = 916
Score = 32.7 bits (71), Expect = 0.90
Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 6/51 (11%)
Frame = +2
Query: 107 MADAAVEKQDAAPEEVTSTEVKE---SPIKKSPTK---KTEVPESNGKENG 241
+ADA VEK + A V + V+E SP+ KSP + K+ VP+S +E G
Sbjct: 602 VADAKVEKPEKAKSPVPKSPVEEKGKSPVPKSPVEEKGKSPVPKSPVEEKG 652
>EF560736-1|ABQ59046.1| 916|Homo sapiens NEFM protein protein.
Length = 916
Score = 32.7 bits (71), Expect = 0.90
Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 6/51 (11%)
Frame = +2
Query: 107 MADAAVEKQDAAPEEVTSTEVKE---SPIKKSPTK---KTEVPESNGKENG 241
+ADA VEK + A V + V+E SP+ KSP + K+ VP+S +E G
Sbjct: 602 VADAKVEKPEKAKSPVPKSPVEEKGKSPVPKSPVEEKGKSPVPKSPVEEKG 652
>BC096757-1|AAH96757.1| 916|Homo sapiens neurofilament, medium
polypeptide 150kDa protein.
Length = 916
Score = 32.7 bits (71), Expect = 0.90
Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 6/51 (11%)
Frame = +2
Query: 107 MADAAVEKQDAAPEEVTSTEVKE---SPIKKSPTK---KTEVPESNGKENG 241
+ADA VEK + A V + V+E SP+ KSP + K+ VP+S +E G
Sbjct: 602 VADAKVEKPEKAKSPVPKSPVEEKGKSPVPKSPVEEKGKSPVPKSPVEEKG 652
>AF181990-1|AAF00492.1| 260|Homo sapiens neurofilament-3 (150 kD
medium) protein.
Length = 260
Score = 32.7 bits (71), Expect = 0.90
Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 6/51 (11%)
Frame = +2
Query: 107 MADAAVEKQDAAPEEVTSTEVKE---SPIKKSPTK---KTEVPESNGKENG 241
+ADA VEK + A V + V+E SP+ KSP + K+ VP+S +E G
Sbjct: 165 VADAKVEKPEKAKSPVPKSPVEEKGKSPVPKSPVEEKGKSPVPKSPVEEKG 215
>EF560737-1|ABQ59047.1| 877|Homo sapiens NEFM protein protein.
Length = 877
Score = 30.7 bits (66), Expect = 3.6
Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 6/49 (12%)
Frame = +2
Query: 107 MADAAVEKQDAAPEEVTSTEVKE---SPIKKSPTK---KTEVPESNGKE 235
+ADA VEK + A V + V+E SP+ KSP + K+ VP+S +E
Sbjct: 602 VADAKVEKPEKAKSPVPKSPVEEKGKSPVSKSPVEEKAKSPVPKSPVEE 650
>BC005342-1|AAH05342.1| 282|Homo sapiens nucleosomal binding
protein 1 protein.
Length = 282
Score = 29.5 bits (63), Expect = 8.4
Identities = 20/76 (26%), Positives = 30/76 (39%), Gaps = 1/76 (1%)
Frame = +2
Query: 131 QDAAPEEVTSTEVKESPIKKSPTKKTEVPESNGKENGTXXXXXXXXXXXXN-GDAEESND 307
++ E+ E E +K KK E + NG++ GD +E+ D
Sbjct: 154 EEDGKEDKNGNEKGEDAKEKEDGKKGEDGKGNGEDGKEKGEDEKEEEDRKETGDGKENED 213
Query: 308 ATENGDVTEVKETGVK 355
E GD E K+ VK
Sbjct: 214 GKEKGDKKEGKDVKVK 229
>AL391294-1|CAI39708.1| 282|Homo sapiens nucleosomal binding
protein 1 protein.
Length = 282
Score = 29.5 bits (63), Expect = 8.4
Identities = 20/76 (26%), Positives = 30/76 (39%), Gaps = 1/76 (1%)
Frame = +2
Query: 131 QDAAPEEVTSTEVKESPIKKSPTKKTEVPESNGKENGTXXXXXXXXXXXXN-GDAEESND 307
++ E+ E E +K KK E + NG++ GD +E+ D
Sbjct: 154 EEDGKEDKNGNEKGEDAKEKEDGKKGEDGKGNGEDGKEKGEDEKEEEDRKETGDGKENED 213
Query: 308 ATENGDVTEVKETGVK 355
E GD E K+ VK
Sbjct: 214 GKEKGDKKEGKDVKVK 229
>AF250330-1|AAK14063.1| 282|Homo sapiens nucleosomal binding
protein 1 protein.
Length = 282
Score = 29.5 bits (63), Expect = 8.4
Identities = 20/76 (26%), Positives = 30/76 (39%), Gaps = 1/76 (1%)
Frame = +2
Query: 131 QDAAPEEVTSTEVKESPIKKSPTKKTEVPESNGKENGTXXXXXXXXXXXXN-GDAEESND 307
++ E+ E E +K KK E + NG++ GD +E+ D
Sbjct: 154 EEDGKEDKNGNEKGEDAKEKEDGKKGEDGKGNGEDGKEKGEDEKEEEDRKETGDGKENED 213
Query: 308 ATENGDVTEVKETGVK 355
E GD E K+ VK
Sbjct: 214 GKEKGDKKEGKDVKVK 229
>AF250329-1|AAK14062.1| 282|Homo sapiens nucleosomal binding
protein 1 protein.
Length = 282
Score = 29.5 bits (63), Expect = 8.4
Identities = 20/76 (26%), Positives = 30/76 (39%), Gaps = 1/76 (1%)
Frame = +2
Query: 131 QDAAPEEVTSTEVKESPIKKSPTKKTEVPESNGKENGTXXXXXXXXXXXXN-GDAEESND 307
++ E+ E E +K KK E + NG++ GD +E+ D
Sbjct: 154 EEDGKEDKNGNEKGEDAKEKEDGKKGEDGKGNGEDGKEKGEDEKEEEDRKETGDGKENED 213
Query: 308 ATENGDVTEVKETGVK 355
E GD E K+ VK
Sbjct: 214 GKEKGDKKEGKDVKVK 229
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 65,781,335
Number of Sequences: 237096
Number of extensions: 1153798
Number of successful extensions: 4389
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 4045
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4382
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5590411794
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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