Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_O10
         (581 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB17E12.13 |rpl1802|rpl18-2|60S ribosomal protein L18|Schizos...   155   3e-39
SPBC11C11.07 |rpl1801|rpl18-1, rpl18|60S ribosomal protein L18|S...   151   7e-38
SPAPB2B4.01c |gpi12||pig-L|Schizosaccharomyces pombe|chr 1|||Manual    27   2.0  
SPCP1E11.10 |||ankyrin repeat protein, unknown biological role|S...    26   4.6  
SPBC4F6.11c |||asparagine synthase |Schizosaccharomyces pombe|ch...    25   8.1  

>SPAPB17E12.13 |rpl1802|rpl18-2|60S ribosomal protein
           L18|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 187

 Score =  155 bits (377), Expect = 3e-39
 Identities = 80/156 (51%), Positives = 108/156 (69%), Gaps = 2/156 (1%)
 Frame = +1

Query: 10  GIDINHKHDRKVRRTEVNSQDVXXXXXXXXXXXXXXXTNAKFNQIILRRLFMSRIMRPPI 189
           GIDI   H RK +R++  S++V               T+++FN+ IL+RLF S+  RPPI
Sbjct: 2   GIDIERHHVRKSQRSKPASENVYLKLLVKLYRFLARRTDSRFNKAILKRLFQSKTNRPPI 61

Query: 190 SLSRLARHMMKPTR--EGLIAVVVGTVSNDVRLYTVPKMTVAALHVTEKARARILAAGGE 363
           S+S++A    + +   EG   V+VGTV++D RL TVPK++VAAL  T+ ARARIL AGGE
Sbjct: 62  SISKIAALTSRKSASLEGKTTVIVGTVTDDERLLTVPKLSVAALRFTKSARARILKAGGE 121

Query: 364 ILTFDQLALRAPTGRKTVLVQGRRNAREAVRHFGSG 471
           +LT DQLALRAPTG  TVL++G+++AREA RHFG G
Sbjct: 122 VLTLDQLALRAPTGSNTVLLRGKKHAREAYRHFGFG 157


>SPBC11C11.07 |rpl1801|rpl18-1, rpl18|60S ribosomal protein
           L18|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 187

 Score =  151 bits (366), Expect = 7e-38
 Identities = 77/156 (49%), Positives = 107/156 (68%), Gaps = 2/156 (1%)
 Frame = +1

Query: 10  GIDINHKHDRKVRRTEVNSQDVXXXXXXXXXXXXXXXTNAKFNQIILRRLFMSRIMRPPI 189
           GIDI   H +K +R++  S++V               T+++FN+ IL+RLF S+  RPPI
Sbjct: 2   GIDIERHHVKKSQRSKPASENVYLKLLVKLYRFLARRTDSRFNKAILKRLFQSKTNRPPI 61

Query: 190 SLSRLARHMMKPTR--EGLIAVVVGTVSNDVRLYTVPKMTVAALHVTEKARARILAAGGE 363
           S+S++A    + +   +    VVVGTV++D R+ TVPK+++AAL  T+ ARARIL AGGE
Sbjct: 62  SISKIAALTSRKSASSQNKTTVVVGTVTDDERMLTVPKLSIAALRFTKSARARILKAGGE 121

Query: 364 ILTFDQLALRAPTGRKTVLVQGRRNAREAVRHFGSG 471
           +LT DQLALRAPTG  TVLV+G+++AREA RHFG G
Sbjct: 122 VLTLDQLALRAPTGSNTVLVRGKKHAREAYRHFGFG 157


>SPAPB2B4.01c |gpi12||pig-L|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 248

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 14/59 (23%), Positives = 28/59 (47%)
 Frame = -1

Query: 278 LTSLETVPTTTAIKPSRVGFIMWRAKRDKEIGGRMIRLINNLRRMIWLNLAFVRLAKYL 102
           ++ L+T+PT    +  R   I+  A R      R   +  +  +M+W    ++ L+KY+
Sbjct: 181 ISYLDTIPTLVQSQAGRNDTIIIHADRKSTQRIRDAMVRGHKSQMVWFRYGWIYLSKYM 239


>SPCP1E11.10 |||ankyrin repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 207

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = -1

Query: 149 RMIWLNLAFVRLAKYLYSFTN 87
           ++I  N  F  LAKYLYSFT+
Sbjct: 106 QVIEANGEFPELAKYLYSFTD 126


>SPBC4F6.11c |||asparagine synthase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 548

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 15/60 (25%), Positives = 30/60 (50%)
 Frame = +1

Query: 181 PPISLSRLARHMMKPTREGLIAVVVGTVSNDVRLYTVPKMTVAALHVTEKARARILAAGG 360
           PP+  S L   +   T + L   ++  + +  R+ T+PK+  + L  +  +R  +L +GG
Sbjct: 206 PPVDESFLMGSISSDTVDTLHTYLIKALQD--RVLTIPKLCSSNLDCSHYSRVCVLYSGG 263


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,387,792
Number of Sequences: 5004
Number of extensions: 46074
Number of successful extensions: 118
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)