Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_O10
(581 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0401 + 3169979-3169981,3170071-3170160,3170556-3170684,317... 151 4e-37
07_03_1667 + 28484069-28484071,28484151-28484240,28484339-284844... 149 2e-36
03_02_0954 - 12687373-12687582,12688885-12689067,12689160-126892... 134 6e-32
03_05_0826 - 27994004-27994966,27995053-27996030,27996101-27996478 34 0.095
06_03_1313 - 29252335-29252446,29253430-29253671,29253770-292538... 31 0.89
10_08_0683 - 19860777-19861070,19861677-19861874,19862498-198626... 28 4.7
06_01_1101 - 9044679-9045320,9045484-9045890,9046020-9046274,904... 27 8.2
>05_01_0401 +
3169979-3169981,3170071-3170160,3170556-3170684,
3170814-3170999,3172001-3172159
Length = 188
Score = 151 bits (366), Expect = 4e-37
Identities = 81/153 (52%), Positives = 101/153 (66%), Gaps = 1/153 (0%)
Frame = +1
Query: 10 GID-INHKHDRKVRRTEVNSQDVXXXXXXXXXXXXXXXTNAKFNQIILRRLFMSRIMRPP 186
GID + ++K +RT S DV T + FN +IL+RLFMS+ RPP
Sbjct: 2 GIDLVAGGRNKKTKRTAPRSDDVYLKLLVKLYRFLVRRTKSNFNAVILKRLFMSKTNRPP 61
Query: 187 ISLSRLARHMMKPTREGLIAVVVGTVSNDVRLYTVPKMTVAALHVTEKARARILAAGGEI 366
+SL RLA+ M+ E IAV+VGTV++D R+ +PKM V AL TE ARARI+ AGGE
Sbjct: 62 LSLRRLAK-FMEGKEENNIAVIVGTVTDDKRIQEIPKMKVTALRFTETARARIVNAGGEC 120
Query: 367 LTFDQLALRAPTGRKTVLVQGRRNAREAVRHFG 465
LTFDQLALRAP G TVL++G +NAREAVRHFG
Sbjct: 121 LTFDQLALRAPLGENTVLLRGPKNAREAVRHFG 153
Score = 41.5 bits (93), Expect = 5e-04
Identities = 17/30 (56%), Positives = 20/30 (66%)
Frame = +2
Query: 464 GPAPGAPRSHTKPYVRTKGHEHARPSRRSN 553
G APG P SHTKPYVR+KG + + R N
Sbjct: 153 GKAPGVPHSHTKPYVRSKGRKFEKARGRRN 182
>07_03_1667 +
28484069-28484071,28484151-28484240,28484339-28484491,
28484575-28484757,28486137-28486295
Length = 195
Score = 149 bits (360), Expect = 2e-36
Identities = 82/159 (51%), Positives = 104/159 (65%), Gaps = 7/159 (4%)
Frame = +1
Query: 10 GID-INHKHDRKVRRTEVNSQDVXXXXXXXXXXXXXXXTNAKFNQIILRRLFMSRIMRPP 186
GID + ++K +RT S+DV T + FN +IL+RLFMS+ RPP
Sbjct: 2 GIDLVAGGRNKKTKRTAPRSEDVYLKLIVKLYRFLVRRTKSHFNAVILKRLFMSKTNRPP 61
Query: 187 ISLSRLARHM--MKPTREGL----IAVVVGTVSNDVRLYTVPKMTVAALHVTEKARARIL 348
+S+ RL R M P R + IAV+VGTV++D R+Y VP M VAAL TE ARARI+
Sbjct: 62 LSMRRLVRFMEGKVPDRHAISGDQIAVIVGTVTDDKRIYEVPAMKVAALRFTETARARII 121
Query: 349 AAGGEILTFDQLALRAPTGRKTVLVQGRRNAREAVRHFG 465
AGGE LTFDQLALRAP G+ TVL++G +NAREAV+HFG
Sbjct: 122 NAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFG 160
Score = 41.9 bits (94), Expect = 4e-04
Identities = 17/30 (56%), Positives = 21/30 (70%)
Frame = +2
Query: 464 GPAPGAPRSHTKPYVRTKGHEHARPSRRSN 553
GPAPG P S+TKPYVR+KG + + R N
Sbjct: 160 GPAPGVPHSNTKPYVRSKGRKFEKARGRRN 189
>03_02_0954 -
12687373-12687582,12688885-12689067,12689160-12689288,
12689375-12689464,12689548-12689550
Length = 204
Score = 134 bits (323), Expect = 6e-32
Identities = 82/170 (48%), Positives = 101/170 (59%), Gaps = 18/170 (10%)
Frame = +1
Query: 10 GID-INHKHDRKVRRTEVNSQDVXXXXXXXXXXXXXXXTNAKFNQIILRRLFMSRIMRPP 186
GID + ++K +RT S DV T + FN +ILRRLFMS+ RPP
Sbjct: 2 GIDLVAGGRNKKTKRTAPKSDDVYLKLIVKLYRFLVRRTKSPFNAVILRRLFMSKTNRPP 61
Query: 187 ISLSRLARHMMKPTREGLIAVVVGTVSNDVRLYTVPKMTVAALHVTEKARARILAAGGEI 366
+SL RL R M +E IAV+VGTV++D R+Y VP M VAAL TE ARARI+ GGE
Sbjct: 62 LSLRRLVRFM--EGKENQIAVIVGTVTDDKRVYEVPAMKVAALRFTETARARIVNTGGEC 119
Query: 367 LTFDQLALRAPTGRKT-----------------VLVQGRRNAREAVRHFG 465
LTFDQLALRAP G+ T VL++G +NAREAV+HFG
Sbjct: 120 LTFDQLALRAPLGQNTYIAMPEILTIDNFALLQVLLRGPKNAREAVKHFG 169
Score = 41.9 bits (94), Expect = 4e-04
Identities = 17/30 (56%), Positives = 21/30 (70%)
Frame = +2
Query: 464 GPAPGAPRSHTKPYVRTKGHEHARPSRRSN 553
GPAPG P S+TKPYVR+KG + + R N
Sbjct: 169 GPAPGVPHSNTKPYVRSKGRKFEKARGRRN 198
>03_05_0826 - 27994004-27994966,27995053-27996030,27996101-27996478
Length = 772
Score = 33.9 bits (74), Expect = 0.095
Identities = 30/119 (25%), Positives = 50/119 (42%), Gaps = 4/119 (3%)
Frame = -1
Query: 560 FRHWSDGSAVRARVPWCARMV*YVNEVHQAPDPK*RTASRA-LRRP*TSTVLRPVGA--- 393
F HW+ +A+ +VP CA M+ + H R RA P + RP A
Sbjct: 440 FHHWAAAAALEHKVP-CAMML--LGSAHMIASIADRRLERAETESPAAAGQGRPAAAPTF 496
Query: 392 RRANWSNVRISPPAAKMRARAFSVTCSAATVILGTV*SLTSLETVPTTTAIKPSRVGFI 216
A +R + A FS+T S +++++G ETVP + ++ + F+
Sbjct: 497 EVARMKLIRTKGSSGMSLAERFSLTLSRSSLVVGRSCVEFEPETVPLLSTLRGKPITFL 555
>06_03_1313 -
29252335-29252446,29253430-29253671,29253770-29253848,
29254991-29255130,29255262-29255571,29255810-29255952,
29256106-29256306,29256453-29256581,29256921-29257199,
29258036-29259720,29261255-29261764,29261901-29262108,
29264347-29264458,29264594-29264763
Length = 1439
Score = 30.7 bits (66), Expect = 0.89
Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = -3
Query: 312 CGYCHFRNS--VKPHIIGDCANDYSDQTLACRLHHVACQTGQRNRRSHDTAHKQSP 151
C Y H R S V H +C N++ C HV C+ + RRS + AHKQ+P
Sbjct: 658 CSYRHCRESKMVSDHY-KNCINEH------C---HVCCKAKEMLRRSSELAHKQNP 703
>10_08_0683 -
19860777-19861070,19861677-19861874,19862498-19862659,
19862763-19862911,19863089-19863236,19863317-19863385,
19863471-19863719,19863937-19864131,19864444-19864560,
19864978-19866537
Length = 1046
Score = 28.3 bits (60), Expect = 4.7
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +3
Query: 135 QPDHPTEIVYEPYHATSDFFVPFGTPH 215
QP P+ VY+PYHA + + + +P+
Sbjct: 89 QPHPPSPYVYDPYHAPAAAYPSYPSPN 115
>06_01_1101 -
9044679-9045320,9045484-9045890,9046020-9046274,
9046375-9046498,9047237-9047289,9047388-9047648,
9047795-9047848,9047975-9048458,9048554-9048592
Length = 772
Score = 27.5 bits (58), Expect = 8.2
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = -1
Query: 266 ETVPTTTAIKPSRVGFIMWR-AKRDKEIGGRMIRLI 162
E P TTA KP RV F + + K D+E+ G + L+
Sbjct: 673 EINPNTTAPKPKRVRFALPKDTKIDREVRGELQELM 708
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,869,749
Number of Sequences: 37544
Number of extensions: 354721
Number of successful extensions: 1012
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 983
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1009
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1364465340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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