Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_O10
(581 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL021492-6|CAA16387.1| 188|Caenorhabditis elegans Hypothetical ... 168 2e-42
Z74038-2|CAE48502.1| 611|Caenorhabditis elegans Hypothetical pr... 28 4.2
Z74038-1|CAA98497.2| 578|Caenorhabditis elegans Hypothetical pr... 28 4.2
U34596-1|AAA97605.1| 570|Caenorhabditis elegans SMA-4 protein. 28 5.6
U00066-5|AAA50739.2| 565|Caenorhabditis elegans Small protein 4... 28 5.6
U39653-2|AAM69064.1| 1092|Caenorhabditis elegans Hypothetical pr... 27 7.4
U39653-1|AAM69065.2| 2471|Caenorhabditis elegans Hypothetical pr... 27 7.4
Z19157-6|CAA79569.2| 1556|Caenorhabditis elegans Hypothetical pr... 27 9.7
AL117193-9|CAB60302.2| 737|Caenorhabditis elegans Hypothetical ... 27 9.7
>AL021492-6|CAA16387.1| 188|Caenorhabditis elegans Hypothetical
protein Y45F10D.12 protein.
Length = 188
Score = 168 bits (409), Expect = 2e-42
Identities = 85/152 (55%), Positives = 104/152 (68%)
Frame = +1
Query: 10 GIDINHKHDRKVRRTEVNSQDVXXXXXXXXXXXXXXXTNAKFNQIILRRLFMSRIMRPPI 189
GIDINHKHDR RRT S++ T KFN I+L+RL MSR R P+
Sbjct: 2 GIDINHKHDRVARRTAPKSENPYLRLLSKLYAFLARRTGEKFNAIVLKRLRMSRRNRQPL 61
Query: 190 SLSRLARHMMKPTREGLIAVVVGTVSNDVRLYTVPKMTVAALHVTEKARARILAAGGEIL 369
SL++LAR + K E V + TV++D RLYTVPK++VAALHVTE ARARILAAGGEI+
Sbjct: 62 SLAKLARAVQKAGNENKTVVTLSTVTDDARLYTVPKISVAALHVTEGARARILAAGGEII 121
Query: 370 TFDQLALRAPTGRKTVLVQGRRNAREAVRHFG 465
T DQLAL++P G TV +QG R+AREA +HFG
Sbjct: 122 TLDQLALKSPKGENTVFLQGPRSAREAEKHFG 153
Score = 44.4 bits (100), Expect = 6e-05
Identities = 21/31 (67%), Positives = 22/31 (70%), Gaps = 2/31 (6%)
Frame = +2
Query: 464 GPAPGAPRSHTKPYVRTKGH--EHARPSRRS 550
GPAPG P SHTKPYVR+KG E AR R S
Sbjct: 153 GPAPGVPHSHTKPYVRSKGRKFERARGRRAS 183
>Z74038-2|CAE48502.1| 611|Caenorhabditis elegans Hypothetical
protein F58B4.1b protein.
Length = 611
Score = 28.3 bits (60), Expect = 4.2
Identities = 23/71 (32%), Positives = 31/71 (43%), Gaps = 4/71 (5%)
Frame = +1
Query: 295 KMTVAALHVTEKARAR--ILAAGGEILTFDQLALRAPTGRKTVLVQGRRNAREAV--RHF 462
KM LH KA IL G +LT DQ+A +T + R R+A R++
Sbjct: 107 KMEGDTLHQVNKAAGLNDILYQGDMVLTDDQIATILEARDETTVSTASRARRQAYRDRYY 166
Query: 463 GSGAWCTSFTY 495
S W +S Y
Sbjct: 167 PSTTWGSSVYY 177
>Z74038-1|CAA98497.2| 578|Caenorhabditis elegans Hypothetical
protein F58B4.1a protein.
Length = 578
Score = 28.3 bits (60), Expect = 4.2
Identities = 23/71 (32%), Positives = 31/71 (43%), Gaps = 4/71 (5%)
Frame = +1
Query: 295 KMTVAALHVTEKARAR--ILAAGGEILTFDQLALRAPTGRKTVLVQGRRNAREAV--RHF 462
KM LH KA IL G +LT DQ+A +T + R R+A R++
Sbjct: 107 KMEGDTLHQVNKAAGLNDILYQGDMVLTDDQIATILEARDETTVSTASRARRQAYRDRYY 166
Query: 463 GSGAWCTSFTY 495
S W +S Y
Sbjct: 167 PSTTWGSSVYY 177
>U34596-1|AAA97605.1| 570|Caenorhabditis elegans SMA-4 protein.
Length = 570
Score = 27.9 bits (59), Expect = 5.6
Identities = 9/18 (50%), Positives = 10/18 (55%)
Frame = +3
Query: 123 ECQVQPDHPTEIVYEPYH 176
+CQ DHP I PYH
Sbjct: 246 QCQTSSDHPDNICINPYH 263
>U00066-5|AAA50739.2| 565|Caenorhabditis elegans Small protein 4,
isoform a protein.
Length = 565
Score = 27.9 bits (59), Expect = 5.6
Identities = 9/18 (50%), Positives = 10/18 (55%)
Frame = +3
Query: 123 ECQVQPDHPTEIVYEPYH 176
+CQ DHP I PYH
Sbjct: 241 QCQTSSDHPDNICINPYH 258
>U39653-2|AAM69064.1| 1092|Caenorhabditis elegans Hypothetical
protein T13H2.5b protein.
Length = 1092
Score = 27.5 bits (58), Expect = 7.4
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +1
Query: 172 IMRPPISLSRLARHMMKPTREGLIA-VVVGTVSNDVRLYT 288
I++PP+ L +L HM PT+ + V G N +LY+
Sbjct: 385 IVQPPLPLHQLQGHMSAPTKITAVPNVAAGFHQNQQQLYS 424
>U39653-1|AAM69065.2| 2471|Caenorhabditis elegans Hypothetical protein
T13H2.5a protein.
Length = 2471
Score = 27.5 bits (58), Expect = 7.4
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +1
Query: 172 IMRPPISLSRLARHMMKPTREGLIA-VVVGTVSNDVRLYT 288
I++PP+ L +L HM PT+ + V G N +LY+
Sbjct: 1764 IVQPPLPLHQLQGHMSAPTKITAVPNVAAGFHQNQQQLYS 1803
>Z19157-6|CAA79569.2| 1556|Caenorhabditis elegans Hypothetical protein
ZC84.1 protein.
Length = 1556
Score = 27.1 bits (57), Expect = 9.7
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -3
Query: 333 SFLSNV*CGYCHFRNSVKPHIIGDCANDYSDQTLAC-RLHHVACQTG 196
S+L+N G+C NSV P +D S Q AC + V+C G
Sbjct: 933 SYLANAFQGFCCTANSVCPDNADYLIDDQSQQPRACTQGTFVSCPNG 979
>AL117193-9|CAB60302.2| 737|Caenorhabditis elegans Hypothetical
protein Y105C5A.15 protein.
Length = 737
Score = 27.1 bits (57), Expect = 9.7
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +3
Query: 120 HECQVQPDHPTEIVYE 167
HECQVQ D PT ++ E
Sbjct: 575 HECQVQNDEPTALLRE 590
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,674,388
Number of Sequences: 27780
Number of extensions: 280089
Number of successful extensions: 671
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 638
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 670
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1215936170
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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