Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_O09
         (599 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos...    54   2e-08
SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1 |Schiz...    51   1e-07
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos...    49   5e-07
SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces po...    48   1e-06
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc...    43   4e-05
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac...    42   9e-05
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy...    40   4e-04
SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz...    37   0.002
SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit ...    36   0.006
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl...    34   0.014
SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb...    34   0.014
SPBC16C6.07c |rpt1||19S proteasome regulatory subunit Rpt1|Schiz...    30   0.22 
SPAC1834.11c |sec18||secretory pathway protein Sec18 |Schizosacc...    30   0.30 
SPCC1682.16 |rpt4||19S proteasome regulatory subunit Rpt4|Schizo...    29   0.69 
SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|...    26   3.7  
SPAC16E8.02 |||DUF962 family protein|Schizosaccharomyces pombe|c...    26   4.8  
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||...    25   8.5  

>SPBC947.01 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 660

 Score = 53.6 bits (123), Expect = 2e-08
 Identities = 25/44 (56%), Positives = 30/44 (68%)
 Frame = +3

Query: 462 DFLTGEEDRILIVGATNRPQELDEAARRTLVKRLYIPLPDVEAR 593
           D  TG   R+L++ ATN P  +DEAARR  VKR YIPLP+ E R
Sbjct: 517 DKQTGHSPRVLVLAATNLPWCIDEAARRRFVKRTYIPLPEKETR 560


>SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 355

 Score = 50.8 bits (116), Expect = 1e-07
 Identities = 22/46 (47%), Positives = 32/46 (69%)
 Frame = +3

Query: 462 DFLTGEEDRILIVGATNRPQELDEAARRTLVKRLYIPLPDVEARKQ 599
           D L   + R+L++GATNRP ++DEA RR + K   IPLP+ E R++
Sbjct: 220 DGLLSGQSRVLVLGATNRPADIDEAIRRRMPKVFSIPLPNAEQRRK 265


>SPAC328.04 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 741

 Score = 49.2 bits (112), Expect = 5e-07
 Identities = 21/42 (50%), Positives = 29/42 (69%)
 Frame = +3

Query: 471 TGEEDRILIVGATNRPQELDEAARRTLVKRLYIPLPDVEARK 596
           T +  R+L++ ATN P  +D+AARR  V+R YIPLPD   R+
Sbjct: 600 TADHPRVLVLAATNLPWCIDDAARRRFVRRTYIPLPDETTRR 641


>SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 432

 Score = 48.0 bits (109), Expect = 1e-06
 Identities = 21/39 (53%), Positives = 27/39 (69%)
 Frame = +3

Query: 477 EEDRILIVGATNRPQELDEAARRTLVKRLYIPLPDVEAR 593
           +E  +L++GATN P  LD A RR   KR+YIPLP+  AR
Sbjct: 262 DESGVLVLGATNIPWTLDSAIRRRFEKRIYIPLPNAHAR 300


>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1190

 Score = 42.7 bits (96), Expect = 4e-05
 Identities = 23/54 (42%), Positives = 32/54 (59%), Gaps = 4/54 (7%)
 Frame = +3

Query: 450 SFYMDFLTGEEDR--ILIVGATNRPQELDEAARR--TLVKRLYIPLPDVEARKQ 599
           S  +  + G E R  ++I+GATNRP  +D A RR     +  Y PLPD +ARK+
Sbjct: 393 STLLALMDGMESRGQVIIIGATNRPDAVDPALRRPGRFDREFYFPLPDRDARKK 446


>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
           Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 815

 Score = 41.5 bits (93), Expect = 9e-05
 Identities = 20/47 (42%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
 Frame = +3

Query: 459 MDFLTGEEDRILIVGATNRPQELDEAARR--TLVKRLYIPLPDVEAR 593
           MD +  +++ + ++GATNRP ++D A  R   L + +Y+PLPD EAR
Sbjct: 627 MDGVNSKKN-VFVIGATNRPDQIDPALMRPGRLDQLIYVPLPDEEAR 672



 Score = 26.6 bits (56), Expect = 2.8
 Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
 Frame = +3

Query: 489 ILIVGATNRPQELDEAARR--TLVKRLYIPLPDVEAR 593
           ++++ ATNRP  +D A RR     + + + +PD   R
Sbjct: 361 VVVMAATNRPNSIDPALRRFGRFDREVDVGIPDPTGR 397


>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1201

 Score = 39.5 bits (88), Expect = 4e-04
 Identities = 17/38 (44%), Positives = 26/38 (68%), Gaps = 2/38 (5%)
 Frame = +3

Query: 486 RILIVGATNRPQELDEAARR--TLVKRLYIPLPDVEAR 593
           +++++GATNRP +LD A RR     +  Y PLP+ +AR
Sbjct: 513 QVVVIGATNRPNDLDPALRRPGRFDREFYFPLPNKQAR 550


>SPBC56F2.07c |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 809

 Score = 37.1 bits (82), Expect = 0.002
 Identities = 17/38 (44%), Positives = 25/38 (65%), Gaps = 2/38 (5%)
 Frame = +3

Query: 486 RILIVGATNRPQELDEAARR--TLVKRLYIPLPDVEAR 593
           +++++ ATNRP  +DEA RR   L K + I +PD  AR
Sbjct: 415 KVVVIAATNRPNSIDEALRRPGRLEKEIEIGIPDKSAR 452



 Score = 35.1 bits (77), Expect = 0.008
 Identities = 18/39 (46%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
 Frame = +3

Query: 489 ILIVGATNRPQELDEAARR--TLVKRLYIPLPDVEARKQ 599
           +L++ ATNRP  +D A  R   L + LY+  P+ EARKQ
Sbjct: 683 VLVLAATNRPDMIDPALMRPGRLDRLLYVGPPNFEARKQ 721


>SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit
           Rpt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 438

 Score = 35.5 bits (78), Expect = 0.006
 Identities = 18/40 (45%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
 Frame = +3

Query: 480 EDRILIVGATNRPQELDEAARRT--LVKRLYIPLPDVEAR 593
           +DR+ ++ ATNR   LD A  R+  L ++L  PLP+ EAR
Sbjct: 322 DDRVKVIAATNRVDTLDPALLRSGRLDRKLEFPLPNEEAR 361


>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
           subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 709

 Score = 34.3 bits (75), Expect = 0.014
 Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
 Frame = +3

Query: 489 ILIVGATNRPQELDEAARRT--LVKRLYIPLPDVEAR 593
           ++ +GATN P+ LD A  R     + +++PLPDV  R
Sbjct: 407 VVFIGATNFPESLDPALTRPGRFDRHIHVPLPDVRGR 443


>SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 779

 Score = 34.3 bits (75), Expect = 0.014
 Identities = 15/39 (38%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
 Frame = +3

Query: 489 ILIVGATNRPQELDEAARRT--LVKRLYIPLPDVEARKQ 599
           +L++GATNRP  LD A RR     + + + +P  +AR++
Sbjct: 315 VLVIGATNRPDSLDSALRRAGRFDREICLTVPSQDAREK 353



 Score = 30.7 bits (66), Expect = 0.17
 Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
 Frame = +3

Query: 468 LTGEEDR--ILIVGATNRPQELDEAARR--TLVKRLYIPLPDVEAR 593
           L G  DR  + ++ ATNRP  +D A  R   L K L + LPD   R
Sbjct: 620 LDGLSDRSGVYVIAATNRPDIIDPAMLRPGRLDKTLLVDLPDAHER 665


>SPBC16C6.07c |rpt1||19S proteasome regulatory subunit
           Rpt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 30.3 bits (65), Expect = 0.22
 Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
 Frame = +3

Query: 489 ILIVGATNRPQELDEAARR--TLVKRLYIPLPDVEAR 593
           I ++ ATNRP  LDEA  R   + +++   LPD+E R
Sbjct: 319 IKVLFATNRPNTLDEALMRPGRIDRKVEFGLPDLEGR 355


>SPAC1834.11c |sec18||secretory pathway protein Sec18
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 792

 Score = 29.9 bits (64), Expect = 0.30
 Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = +3

Query: 483 DRILIVGATNRPQELDEAARR--TLVKRLYIPLPDVEARKQ 599
           + IL++G TNR   +DEA  R   L   + I LPD   R Q
Sbjct: 416 NNILVIGMTNRKDMIDEALLRPGRLEVHMEISLPDEHGRLQ 456


>SPCC1682.16 |rpt4||19S proteasome regulatory subunit
           Rpt4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 388

 Score = 28.7 bits (61), Expect = 0.69
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = +3

Query: 495 IVGATNRPQELDEAARR--TLVKRLYIPLPDVEARKQ 599
           I+ ATNRP  LD A  R   L +++ IPLP+   R +
Sbjct: 274 IIMATNRPDTLDPALLRPGRLDRKIEIPLPNEVGRME 310


>SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 712

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -3

Query: 264 LLNRSLSLVSRACWYARHHQHVS 196
           L+ R  SLVS    +ARHH HV+
Sbjct: 553 LMARPGSLVSNRAGFARHHIHVT 575


>SPAC16E8.02 |||DUF962 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 222

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 10/43 (23%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = -3

Query: 249 LSLVSRA-CWYARHHQHVSSLYIHNTCFSFIQVRIIYVLINYI 124
           ++ +SR+  +YA +H +  ++ IH  C   + +  + +L N++
Sbjct: 1   MTYLSRSYSFYAAYHSNPVNIKIHQVCIPLLLLTALVLLHNFV 43


>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 948

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 10/30 (33%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = +3

Query: 459 MDFLTGEEDR-ILIVGATNRPQELDEAARR 545
           +D ++ + ++ + ++GATNRP  LD +  R
Sbjct: 784 LDSISKDNNKYVFVIGATNRPDLLDPSLLR 813


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,196,874
Number of Sequences: 5004
Number of extensions: 40789
Number of successful extensions: 91
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)