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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_O09
         (599 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016427-1|AAB65351.1|  594|Caenorhabditis elegans Hypothetical ...    63   2e-10
U53149-2|AAM29664.1|  451|Caenorhabditis elegans Hypothetical pr...    56   3e-08
Z75713-7|CAD56596.1|  475|Caenorhabditis elegans Hypothetical pr...    53   1e-07
Z75713-6|CAB00052.1|  472|Caenorhabditis elegans Hypothetical pr...    53   1e-07
L25423-1|AAA28109.1|  472|Caenorhabditis elegans mei-1 protein.        53   1e-07
AC024756-9|AAK29883.4|  430|Caenorhabditis elegans Related to ye...    53   1e-07
Z69664-3|CAC42312.1|  339|Caenorhabditis elegans Hypothetical pr...    44   6e-05
Z69664-2|CAA93516.2|  342|Caenorhabditis elegans Hypothetical pr...    44   6e-05
AC024791-6|AAF60660.2|  782|Caenorhabditis elegans Human spg (sp...    39   0.002
Z49886-1|CAA90050.1|  809|Caenorhabditis elegans Hypothetical pr...    39   0.003
Z48334-9|CAA88314.1|  810|Caenorhabditis elegans Hypothetical pr...    38   0.004
Z48045-12|CAA88105.1|  810|Caenorhabditis elegans Hypothetical p...    38   0.004
Z68316-11|CAO82045.1| 1242|Caenorhabditis elegans Hypothetical p...    36   0.017
Z68316-10|CAO82044.1| 1289|Caenorhabditis elegans Hypothetical p...    36   0.017
Z68316-9|CAA92684.2| 1291|Caenorhabditis elegans Hypothetical pr...    36   0.017
Z68297-10|CAO82029.1| 1242|Caenorhabditis elegans Hypothetical p...    36   0.017
Z68297-9|CAO82028.1| 1289|Caenorhabditis elegans Hypothetical pr...    36   0.017
Z68297-8|CAA92596.2| 1291|Caenorhabditis elegans Hypothetical pr...    36   0.017
DQ140399-1|AAZ73761.1| 1291|Caenorhabditis elegans lin-48 expres...    36   0.017
AL117203-4|CAB55106.2|  813|Caenorhabditis elegans Hypothetical ...    34   0.089
AF059715-1|AAF05624.1|  813|Caenorhabditis elegans cell survival...    34   0.089
Z75712-1|CAB00040.1|  724|Caenorhabditis elegans Hypothetical pr...    31   0.48 
Z49128-5|CAA88955.1|  676|Caenorhabditis elegans Hypothetical pr...    30   1.5  
Z96100-7|CAB09531.1|  824|Caenorhabditis elegans Hypothetical pr...    29   2.5  
Z79698-2|CAB01976.1|  824|Caenorhabditis elegans Hypothetical pr...    29   2.5  
Z79698-1|CAL44963.1|  758|Caenorhabditis elegans Hypothetical pr...    29   2.5  
Z81519-1|CAB04216.1|  750|Caenorhabditis elegans Hypothetical pr...    29   3.3  
AF024493-9|AAV58871.1|  398|Caenorhabditis elegans Proteasome re...    27   7.7  
AF024493-8|AAB70326.2|  406|Caenorhabditis elegans Proteasome re...    27   7.7  

>AF016427-1|AAB65351.1|  594|Caenorhabditis elegans Hypothetical
           protein F32D1.1 protein.
          Length = 594

 Score = 62.9 bits (146), Expect = 2e-10
 Identities = 28/43 (65%), Positives = 35/43 (81%)
 Frame = +3

Query: 471 TGEEDRILIVGATNRPQELDEAARRTLVKRLYIPLPDVEARKQ 599
           T  ++R+L++GATNRPQELDEAARR   KRLYI LP+ E+R Q
Sbjct: 448 TAPDERLLVLGATNRPQELDEAARRRFQKRLYIALPEPESRTQ 490


>U53149-2|AAM29664.1|  451|Caenorhabditis elegans Hypothetical
           protein C24B5.2a protein.
          Length = 451

 Score = 55.6 bits (128), Expect = 3e-08
 Identities = 24/40 (60%), Positives = 31/40 (77%)
 Frame = +3

Query: 480 EDRILIVGATNRPQELDEAARRTLVKRLYIPLPDVEARKQ 599
           +DRIL++GATNRP ELD+A  R   KR+ + LPD EARK+
Sbjct: 313 DDRILVIGATNRPHELDDAVLRRFPKRIMLNLPDEEARKE 352


>Z75713-7|CAD56596.1|  475|Caenorhabditis elegans Hypothetical
           protein T01G9.5b protein.
          Length = 475

 Score = 53.2 bits (122), Expect = 1e-07
 Identities = 22/38 (57%), Positives = 30/38 (78%)
 Frame = +3

Query: 486 RILIVGATNRPQELDEAARRTLVKRLYIPLPDVEARKQ 599
           R+ ++ ATN P ELDEA RR   KR++IPLPD++ARK+
Sbjct: 332 RVFVLAATNIPWELDEALRRRFEKRIFIPLPDIDARKK 369


>Z75713-6|CAB00052.1|  472|Caenorhabditis elegans Hypothetical
           protein T01G9.5a protein.
          Length = 472

 Score = 53.2 bits (122), Expect = 1e-07
 Identities = 22/38 (57%), Positives = 30/38 (78%)
 Frame = +3

Query: 486 RILIVGATNRPQELDEAARRTLVKRLYIPLPDVEARKQ 599
           R+ ++ ATN P ELDEA RR   KR++IPLPD++ARK+
Sbjct: 332 RVFVLAATNIPWELDEALRRRFEKRIFIPLPDIDARKK 369


>L25423-1|AAA28109.1|  472|Caenorhabditis elegans mei-1 protein.
          Length = 472

 Score = 53.2 bits (122), Expect = 1e-07
 Identities = 22/38 (57%), Positives = 30/38 (78%)
 Frame = +3

Query: 486 RILIVGATNRPQELDEAARRTLVKRLYIPLPDVEARKQ 599
           R+ ++ ATN P ELDEA RR   KR++IPLPD++ARK+
Sbjct: 332 RVFVLAATNIPWELDEALRRRFEKRIFIPLPDIDARKK 369


>AC024756-9|AAK29883.4|  430|Caenorhabditis elegans Related to yeast
           vacuolar proteinsorting factor protein 4 protein.
          Length = 430

 Score = 53.2 bits (122), Expect = 1e-07
 Identities = 24/39 (61%), Positives = 29/39 (74%)
 Frame = +3

Query: 483 DRILIVGATNRPQELDEAARRTLVKRLYIPLPDVEARKQ 599
           D IL++GATN P  LD A RR   KR+YIPLPD+ ARK+
Sbjct: 254 DGILVLGATNIPWILDSAIRRRFEKRIYIPLPDIHARKE 292


>Z69664-3|CAC42312.1|  339|Caenorhabditis elegans Hypothetical
           protein K04D7.2b protein.
          Length = 339

 Score = 44.4 bits (100), Expect = 6e-05
 Identities = 17/46 (36%), Positives = 30/46 (65%)
 Frame = +3

Query: 462 DFLTGEEDRILIVGATNRPQELDEAARRTLVKRLYIPLPDVEARKQ 599
           D  +   D+I+++GATNRP+++D A  R +  R  +P+P+ + R Q
Sbjct: 209 DGFSSSGDQIIVMGATNRPRDVDAAILRRMTARFQVPVPNAKQRSQ 254


>Z69664-2|CAA93516.2|  342|Caenorhabditis elegans Hypothetical
           protein K04D7.2a protein.
          Length = 342

 Score = 44.4 bits (100), Expect = 6e-05
 Identities = 17/46 (36%), Positives = 30/46 (65%)
 Frame = +3

Query: 462 DFLTGEEDRILIVGATNRPQELDEAARRTLVKRLYIPLPDVEARKQ 599
           D  +   D+I+++GATNRP+++D A  R +  R  +P+P+ + R Q
Sbjct: 212 DGFSSSGDQIIVMGATNRPRDVDAAILRRMTARFQVPVPNAKQRSQ 257


>AC024791-6|AAF60660.2|  782|Caenorhabditis elegans Human spg
           (spastic paraplegia)protein 7 protein.
          Length = 782

 Score = 39.1 bits (87), Expect = 0.002
 Identities = 17/47 (36%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
 Frame = +3

Query: 459 MDFLTGEEDRILIVGATNRPQELDEAARRT--LVKRLYIPLPDVEAR 593
           MD  T +E  ++++ ATNR   LD A  R     +++Y+P+PD++ R
Sbjct: 424 MDGFTTDESSVIVIAATNRVDILDSALLRPGRFDRQIYVPVPDIKGR 470


>Z49886-1|CAA90050.1|  809|Caenorhabditis elegans Hypothetical
           protein C06A1.1 protein.
          Length = 809

 Score = 38.7 bits (86), Expect = 0.003
 Identities = 21/49 (42%), Positives = 31/49 (63%), Gaps = 2/49 (4%)
 Frame = +3

Query: 459 MDFLTGEEDRILIVGATNRPQELDEAARR--TLVKRLYIPLPDVEARKQ 599
           MD +  +++ + I+GATNRP  +D A  R   L + +YIPLPD  +R Q
Sbjct: 615 MDGMNAKKN-VFIIGATNRPDIIDPAVLRPGRLDQLIYIPLPDEASRHQ 662



 Score = 29.9 bits (64), Expect = 1.5
 Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
 Frame = +3

Query: 408 KTKYHVEAFYTMS*SFYMDFLTGEEDRILIVGATNRPQELDEAARR--TLVKRLYIPLPD 581
           KT   VE          MD + G  + ++++ ATNRP  +D A RR     + + I +PD
Sbjct: 321 KTNGEVERRIVSQLLTLMDGVKGRSN-LVVIAATNRPNSIDGALRRFGRFDREIDIGIPD 379

Query: 582 VEAR 593
              R
Sbjct: 380 AVGR 383


>Z48334-9|CAA88314.1|  810|Caenorhabditis elegans Hypothetical
           protein C41C4.8 protein.
          Length = 810

 Score = 38.3 bits (85), Expect = 0.004
 Identities = 21/49 (42%), Positives = 31/49 (63%), Gaps = 2/49 (4%)
 Frame = +3

Query: 459 MDFLTGEEDRILIVGATNRPQELDEAARR--TLVKRLYIPLPDVEARKQ 599
           MD +  +++ + I+GATNRP  +D A  R   L + +YIPLPD  +R Q
Sbjct: 613 MDGMNAKKN-VFIIGATNRPDIIDPAVLRPGRLDQLIYIPLPDEASRLQ 660



 Score = 28.3 bits (60), Expect = 4.4
 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
 Frame = +3

Query: 489 ILIVGATNRPQELDEAARR--TLVKRLYIPLPDVEAR 593
           ++++ ATNRP  +D A RR     + + I +PD   R
Sbjct: 346 VVVIAATNRPNSIDGALRRFGRFDREIDIGIPDAVGR 382


>Z48045-12|CAA88105.1|  810|Caenorhabditis elegans Hypothetical
           protein C41C4.8 protein.
          Length = 810

 Score = 38.3 bits (85), Expect = 0.004
 Identities = 21/49 (42%), Positives = 31/49 (63%), Gaps = 2/49 (4%)
 Frame = +3

Query: 459 MDFLTGEEDRILIVGATNRPQELDEAARR--TLVKRLYIPLPDVEARKQ 599
           MD +  +++ + I+GATNRP  +D A  R   L + +YIPLPD  +R Q
Sbjct: 613 MDGMNAKKN-VFIIGATNRPDIIDPAVLRPGRLDQLIYIPLPDEASRLQ 660



 Score = 28.3 bits (60), Expect = 4.4
 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
 Frame = +3

Query: 489 ILIVGATNRPQELDEAARR--TLVKRLYIPLPDVEAR 593
           ++++ ATNRP  +D A RR     + + I +PD   R
Sbjct: 346 VVVIAATNRPNSIDGALRRFGRFDREIDIGIPDAVGR 382


>Z68316-11|CAO82045.1| 1242|Caenorhabditis elegans Hypothetical
           protein F11A10.1c protein.
          Length = 1242

 Score = 36.3 bits (80), Expect = 0.017
 Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
 Frame = +3

Query: 459 MDFLTGEEDRILIVGATNRPQELDEAARR--TLVKRLYIPLPDVEARKQ 599
           MD L G  + ++++GATNR   LD A RR     + L   LPD+ AR+Q
Sbjct: 524 MDGLDGRGE-VVVIGATNRLDTLDPALRRPGRFDRELRFSLPDLNARRQ 571


>Z68316-10|CAO82044.1| 1289|Caenorhabditis elegans Hypothetical
           protein F11A10.1b protein.
          Length = 1289

 Score = 36.3 bits (80), Expect = 0.017
 Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
 Frame = +3

Query: 459 MDFLTGEEDRILIVGATNRPQELDEAARR--TLVKRLYIPLPDVEARKQ 599
           MD L G  + ++++GATNR   LD A RR     + L   LPD+ AR+Q
Sbjct: 522 MDGLDGRGE-VVVIGATNRLDTLDPALRRPGRFDRELRFSLPDLNARRQ 569


>Z68316-9|CAA92684.2| 1291|Caenorhabditis elegans Hypothetical
           protein F11A10.1a protein.
          Length = 1291

 Score = 36.3 bits (80), Expect = 0.017
 Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
 Frame = +3

Query: 459 MDFLTGEEDRILIVGATNRPQELDEAARR--TLVKRLYIPLPDVEARKQ 599
           MD L G  + ++++GATNR   LD A RR     + L   LPD+ AR+Q
Sbjct: 524 MDGLDGRGE-VVVIGATNRLDTLDPALRRPGRFDRELRFSLPDLNARRQ 571


>Z68297-10|CAO82029.1| 1242|Caenorhabditis elegans Hypothetical
           protein F11A10.1c protein.
          Length = 1242

 Score = 36.3 bits (80), Expect = 0.017
 Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
 Frame = +3

Query: 459 MDFLTGEEDRILIVGATNRPQELDEAARR--TLVKRLYIPLPDVEARKQ 599
           MD L G  + ++++GATNR   LD A RR     + L   LPD+ AR+Q
Sbjct: 524 MDGLDGRGE-VVVIGATNRLDTLDPALRRPGRFDRELRFSLPDLNARRQ 571


>Z68297-9|CAO82028.1| 1289|Caenorhabditis elegans Hypothetical
           protein F11A10.1b protein.
          Length = 1289

 Score = 36.3 bits (80), Expect = 0.017
 Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
 Frame = +3

Query: 459 MDFLTGEEDRILIVGATNRPQELDEAARR--TLVKRLYIPLPDVEARKQ 599
           MD L G  + ++++GATNR   LD A RR     + L   LPD+ AR+Q
Sbjct: 522 MDGLDGRGE-VVVIGATNRLDTLDPALRRPGRFDRELRFSLPDLNARRQ 569


>Z68297-8|CAA92596.2| 1291|Caenorhabditis elegans Hypothetical
           protein F11A10.1a protein.
          Length = 1291

 Score = 36.3 bits (80), Expect = 0.017
 Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
 Frame = +3

Query: 459 MDFLTGEEDRILIVGATNRPQELDEAARR--TLVKRLYIPLPDVEARKQ 599
           MD L G  + ++++GATNR   LD A RR     + L   LPD+ AR+Q
Sbjct: 524 MDGLDGRGE-VVVIGATNRLDTLDPALRRPGRFDRELRFSLPDLNARRQ 571


>DQ140399-1|AAZ73761.1| 1291|Caenorhabditis elegans lin-48
           expression abnormal protein protein.
          Length = 1291

 Score = 36.3 bits (80), Expect = 0.017
 Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
 Frame = +3

Query: 459 MDFLTGEEDRILIVGATNRPQELDEAARR--TLVKRLYIPLPDVEARKQ 599
           MD L G  + ++++GATNR   LD A RR     + L   LPD+ AR+Q
Sbjct: 524 MDGLDGRGE-VVVIGATNRLDTLDPALRRPGRFDRELRFSLPDLNARRQ 571


>AL117203-4|CAB55106.2|  813|Caenorhabditis elegans Hypothetical
           protein Y48C3A.7 protein.
          Length = 813

 Score = 33.9 bits (74), Expect = 0.089
 Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
 Frame = +3

Query: 459 MDFLTGEEDRILIVGATNRPQELDEAARR--TLVKRLYIPLPDVEAR 593
           MD + G + ++ ++GATNRP  +D A  R   L K L++  P VE R
Sbjct: 662 MDGVEGRQ-KVFLIGATNRPDIVDAAILRPGRLDKILFVDFPSVEDR 707



 Score = 27.5 bits (58), Expect = 7.7
 Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = +3

Query: 489 ILIVGATNRPQELDEAARRT--LVKRLYIPLPDVEARKQ 599
           +L++G T+RP  +D   RR       + + +PD  AR++
Sbjct: 371 VLVIGTTSRPDAVDGGLRRAGRFENEISLGIPDETAREK 409


>AF059715-1|AAF05624.1|  813|Caenorhabditis elegans cell survival
           CED-4-interactingprotein MAC-1 protein.
          Length = 813

 Score = 33.9 bits (74), Expect = 0.089
 Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
 Frame = +3

Query: 459 MDFLTGEEDRILIVGATNRPQELDEAARR--TLVKRLYIPLPDVEAR 593
           MD + G + ++ ++GATNRP  +D A  R   L K L++  P VE R
Sbjct: 662 MDGVEGRQ-KVFLIGATNRPDIVDAAILRPGRLDKILFVDFPSVEDR 707



 Score = 29.1 bits (62), Expect = 2.5
 Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
 Frame = +3

Query: 489 ILIVGATNRPQELDEAARRT--LVKRLYIPLPDVEARKQ 599
           +L++G T+RP  +D   RRT      + + +PD  AR++
Sbjct: 371 VLVIGTTSRPDAVDGRLRRTGRFQNEISLGIPDETAREK 409


>Z75712-1|CAB00040.1|  724|Caenorhabditis elegans Hypothetical
           protein K04G2.3 protein.
          Length = 724

 Score = 31.5 bits (68), Expect = 0.48
 Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
 Frame = +3

Query: 477 EEDRILIVGATNRPQELDEAARR--TLVKRLYIPLP 578
           +  R++++ ATNRP +LD A  R   L + +Y+ LP
Sbjct: 593 KSSRVILLAATNRPDQLDSALLRPGRLDRAIYVGLP 628


>Z49128-5|CAA88955.1|  676|Caenorhabditis elegans Hypothetical
           protein M03C11.5 protein.
          Length = 676

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
 Frame = +3

Query: 459 MDFLTGEEDRILIVGATNRPQELDEAARR--TLVKRLYIPLPDVEAR 593
           MD  T  E  I+++ ATNR  +LD+A  R      R+ +P PD+  R
Sbjct: 329 MDGFTRNEG-IIVIAATNRVDDLDKALLRPGRFDVRVTVPKPDLAGR 374


>Z96100-7|CAB09531.1|  824|Caenorhabditis elegans Hypothetical
           protein H15N14.2a protein.
          Length = 824

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = +3

Query: 483 DRILIVGATNRPQELDEAARR--TLVKRLYIPLPDVEARKQ 599
           + IL++G TNR   +DEA  R   L  ++ + LPD   R Q
Sbjct: 442 NNILVIGMTNRRDMIDEALLRPGRLEVQMEVSLPDETGRLQ 482


>Z79698-2|CAB01976.1|  824|Caenorhabditis elegans Hypothetical
           protein H15N14.2a protein.
          Length = 824

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = +3

Query: 483 DRILIVGATNRPQELDEAARR--TLVKRLYIPLPDVEARKQ 599
           + IL++G TNR   +DEA  R   L  ++ + LPD   R Q
Sbjct: 442 NNILVIGMTNRRDMIDEALLRPGRLEVQMEVSLPDETGRLQ 482


>Z79698-1|CAL44963.1|  758|Caenorhabditis elegans Hypothetical
           protein H15N14.2b protein.
          Length = 758

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = +3

Query: 483 DRILIVGATNRPQELDEAARR--TLVKRLYIPLPDVEARKQ 599
           + IL++G TNR   +DEA  R   L  ++ + LPD   R Q
Sbjct: 376 NNILVIGMTNRRDMIDEALLRPGRLEVQMEVSLPDETGRLQ 416


>Z81519-1|CAB04216.1|  750|Caenorhabditis elegans Hypothetical
           protein F29C12.4 protein.
          Length = 750

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +3

Query: 507 TNRPQELDEAARRTLVKRLYIPLPDVEARK 596
           T   Q++ EA RRT+VKR ++P+    A K
Sbjct: 271 TPNVQQIHEAIRRTVVKRAFVPVLSGSALK 300


>AF024493-9|AAV58871.1|  398|Caenorhabditis elegans Proteasome
           regulatory particle,atpase-like protein 4, isoform b
           protein.
          Length = 398

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
 Frame = +3

Query: 486 RILIVGATNRPQELDEAARR--TLVKRLYIPLPDVEAR 593
           ++ ++ ATNRP  LD A  R   L +++ I LP+ ++R
Sbjct: 281 KVKVIMATNRPDTLDPALLRPGRLDRKIEIGLPNEQSR 318


>AF024493-8|AAB70326.2|  406|Caenorhabditis elegans Proteasome
           regulatory particle,atpase-like protein 4, isoform a
           protein.
          Length = 406

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
 Frame = +3

Query: 486 RILIVGATNRPQELDEAARR--TLVKRLYIPLPDVEAR 593
           ++ ++ ATNRP  LD A  R   L +++ I LP+ ++R
Sbjct: 289 KVKVIMATNRPDTLDPALLRPGRLDRKIEIGLPNEQSR 326


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,038,193
Number of Sequences: 27780
Number of extensions: 223158
Number of successful extensions: 448
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 439
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 445
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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