Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_O09
         (599 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    22   5.3  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    21   7.0  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    21   7.0  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   7.0  

>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -1

Query: 440 SIEGFNVVFCFKRP*IINWY 381
           +I  F ++FC   P +IN Y
Sbjct: 95  AISNFLMMFCMSPPMVINCY 114


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = +3

Query: 438 TMS*SFYMDFLTGEEDRILIVGATNRPQELDEAA 539
           T+  +     +TG   R+LI G+ +  Q+ D+ A
Sbjct: 408 TLGIAIVSGLITGLIMRVLICGSISEEQKFDDEA 441


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -1

Query: 440 SIEGFNVVFCFKRP*IINWY 381
           +I  F ++FC   P +IN Y
Sbjct: 61  AISDFLMMFCMSPPMVINCY 80


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -3

Query: 219 ARHHQHVSSLYIHNTCFS 166
           A HH H+SS    + C S
Sbjct: 284 ASHHSHLSSALGRSACHS 301


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,125
Number of Sequences: 438
Number of extensions: 2702
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17604432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)