Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_O08
         (549 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024811-3|AAF60778.1|  209|Caenorhabditis elegans Hypothetical ...    28   5.1  
Z70207-3|CAA94132.1|  336|Caenorhabditis elegans Hypothetical pr...    27   8.9  
AC006677-9|AAF39947.1|  344|Caenorhabditis elegans Serpentine re...    27   8.9  

>AC024811-3|AAF60778.1|  209|Caenorhabditis elegans Hypothetical
           protein Y54E10BL.3 protein.
          Length = 209

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = -2

Query: 251 GFMYEKHYIGLFILFIITY 195
           GF  +K+++ LF LFI+T+
Sbjct: 55  GFQVQKNFVNLFFLFILTF 73


>Z70207-3|CAA94132.1|  336|Caenorhabditis elegans Hypothetical
           protein F15A2.3 protein.
          Length = 336

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -3

Query: 433 YFNNKLNIYSDMLYFINPIL*YRILLRPKLAL 338
           YF   LNI+     FINP+L +  +L  + AL
Sbjct: 268 YFEYLLNIFGSFTAFINPLLTFYFVLPYRRAL 299


>AC006677-9|AAF39947.1|  344|Caenorhabditis elegans Serpentine
           receptor, class h protein56 protein.
          Length = 344

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 14/37 (37%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
 Frame = -1

Query: 309 TYMLVKIVKVLHN*IFLI-VGFYV*KTLYWIIHTVYH 202
           TY+L++  +VL      I  GF + +T ++++HTVYH
Sbjct: 193 TYVLLQGGEVLPFWSITIGFGFVIFQTFFFLLHTVYH 229


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,851,227
Number of Sequences: 27780
Number of extensions: 208132
Number of successful extensions: 393
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 387
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 393
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)