Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_O08
         (549 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    22   3.6  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    21   6.2  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      21   8.2  

>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -3

Query: 439 DKYFNNKLNIYSDMLYFINPIL 374
           + Y NN  N Y+  LY+ N I+
Sbjct: 331 NNYNNNNYNNYNKKLYYKNYII 352


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 7/25 (28%), Positives = 16/25 (64%)
 Frame = -2

Query: 254 LGFMYEKHYIGLFILFIITYKSYYL 180
           +GF    +YI   ++ +I++ S++L
Sbjct: 231 MGFFMMDYYIPSILIVVISWVSFWL 255


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -3

Query: 433 YFNNKLNIYSDMLYFINPI 377
           Y N+  N+ + ++YFI  I
Sbjct: 209 YLNHDYNLENKLIYFIEDI 227


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,059
Number of Sequences: 438
Number of extensions: 2871
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15704448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)