Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_O07
         (511 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomy...    27   2.2  
SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5 |Sc...    26   3.8  
SPCC622.07 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual         25   5.0  
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz...    25   6.6  

>SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 542

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = +3

Query: 312 TDFDRTFLILRLT*VTACRAPLPIALACPLTHCIG 416
           TD+D T  I       A RAP  IALA  +T+ +G
Sbjct: 275 TDYDATAHIAEEIENAAVRAPNAIALALSITYVLG 309


>SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 632

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -3

Query: 332 KSPVKIRPVVPKINQNRQKVKKLYVWFGYRICIHM 228
           K PV + P+  +I+ +R K++  + W  Y  CI +
Sbjct: 136 KLPVDLVPIRLEIDADRYKLRDSFTWNLYDKCISL 170


>SPCC622.07 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 128

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = +1

Query: 211 FFFTKYI*MHIRYPNQTYNFLTFCLFWLILGTTGRILTGLF*Y 339
           F F  Y+   + Y      F  FC  +L LG  G I+T +  Y
Sbjct: 40  FLFLNYVVDIVCYVKNYNGFSFFCWVFLNLGVIGIIITVIIYY 82


>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1273

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = -1

Query: 475 EEGNAFTHYPYPL 437
           +  NAF++YPYPL
Sbjct: 242 QNSNAFSNYPYPL 254


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,046,848
Number of Sequences: 5004
Number of extensions: 40640
Number of successful extensions: 93
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 204242806
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)