Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_O07
         (511 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1402 + 37052996-37053449,37053533-37053630,37053718-370538...    28   5.0  
11_03_0025 + 9047646-9047958,9048150-9048474,9049833-9051828,905...    27   8.8  
04_04_1013 + 30109321-30110790                                         27   8.8  
04_04_1006 + 30048618-30050087                                         27   8.8  

>01_06_1402 +
           37052996-37053449,37053533-37053630,37053718-37053888,
           37054017-37054117,37054928-37055063,37055155-37055205,
           37055311-37055598,37055896-37056130,37056408-37056523,
           37057300-37057496,37057739-37057745
          Length = 617

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +2

Query: 398 PYPLHWGTPVSLMQWVRVVSKCI 466
           PYPL WGTP+    W   +  C+
Sbjct: 404 PYPLQWGTPI--FSWKMGLVMCV 424


>11_03_0025 +
           9047646-9047958,9048150-9048474,9049833-9051828,
           9051991-9052190,9052851-9052899
          Length = 960

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -2

Query: 69  KVFKKIHNLYRFHLYRFLVLASC 1
           + FKK  +L++FH  R L L+ C
Sbjct: 501 RAFKKAPDLFKFHALRILDLSEC 523


>04_04_1013 + 30109321-30110790
          Length = 489

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +2

Query: 332 FDTPVNLGYSLSCPLTHCIGVPPYPLH 412
           FDT  +L ++   P T+C    PYP H
Sbjct: 142 FDTGSDLSWTQCEPCTNCSSFTPYPPH 168


>04_04_1006 + 30048618-30050087
          Length = 489

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +2

Query: 332 FDTPVNLGYSLSCPLTHCIGVPPYPLH 412
           FDT  +L ++   P T+C    PYP H
Sbjct: 142 FDTGSDLSWTQCEPCTNCSSFTPYPPH 168


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,432,151
Number of Sequences: 37544
Number of extensions: 250598
Number of successful extensions: 507
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 494
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 507
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1095026320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)