Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_O07
         (511 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80842-18|AAU20826.1|  132|Caenorhabditis elegans Hypothetical p...    28   4.5  
U41536-3|AAN39668.1| 1576|Caenorhabditis elegans Kinesin-like pr...    28   4.5  
U41536-2|AAM51501.1| 1610|Caenorhabditis elegans Kinesin-like pr...    28   4.5  
U41536-1|AAK39239.1| 1595|Caenorhabditis elegans Kinesin-like pr...    28   4.5  
AB023496-1|BAA97564.1|  793|Caenorhabditis elegans kinesin like ...    28   4.5  

>U80842-18|AAU20826.1|  132|Caenorhabditis elegans Hypothetical
           protein ZC239.17 protein.
          Length = 132

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -2

Query: 246 SYMHSYVFSKKKLLF*HYKQTLQFYLLV*TSSRC 145
           SY   +VFS   L+F +Y   L+ Y +V  SS+C
Sbjct: 96  SYTRFFVFSLIFLVFVYYIPALKSYFIVEKSSKC 129


>U41536-3|AAN39668.1| 1576|Caenorhabditis elegans Kinesin-like
           protein protein 4,isoform c protein.
          Length = 1576

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +2

Query: 338 TPVNLGYSLSCPLTHCIGVPPYP 406
           TP+  G+ L  P+T   G+PP+P
Sbjct: 681 TPMTPGFCLPTPITTPTGLPPFP 703


>U41536-2|AAM51501.1| 1610|Caenorhabditis elegans Kinesin-like
           protein protein 4,isoform b protein.
          Length = 1610

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +2

Query: 338 TPVNLGYSLSCPLTHCIGVPPYP 406
           TP+  G+ L  P+T   G+PP+P
Sbjct: 681 TPMTPGFCLPTPITTPTGLPPFP 703


>U41536-1|AAK39239.1| 1595|Caenorhabditis elegans Kinesin-like
           protein protein 4,isoform a protein.
          Length = 1595

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +2

Query: 338 TPVNLGYSLSCPLTHCIGVPPYP 406
           TP+  G+ L  P+T   G+PP+P
Sbjct: 681 TPMTPGFCLPTPITTPTGLPPFP 703


>AB023496-1|BAA97564.1|  793|Caenorhabditis elegans kinesin like
           protein KLP-4 protein.
          Length = 793

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +2

Query: 338 TPVNLGYSLSCPLTHCIGVPPYP 406
           TP+  G+ L  P+T   G+PP+P
Sbjct: 101 TPMTPGFCLPTPITTPTGLPPFP 123


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,289,839
Number of Sequences: 27780
Number of extensions: 236302
Number of successful extensions: 555
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 539
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 555
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 988489374
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)