Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_O07
         (511 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    25   0.34 
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    24   1.1  
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         23   2.4  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    23   2.4  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    23   2.4  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    21   9.8  

>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 25.4 bits (53), Expect = 0.34
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = +1

Query: 370 PPYPLHWRAPLPIALGDSGFTNAMGKG 450
           PP    W   L   +G  GF +AMG G
Sbjct: 45  PPLNPMWHGILGFVIGMLGFVSAMGNG 71


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 10/27 (37%), Positives = 12/27 (44%)
 Frame = +1

Query: 370 PPYPLHWRAPLPIALGDSGFTNAMGKG 450
           PP    W   L   +G  GF + MG G
Sbjct: 11  PPLNPMWHGILGFVIGMLGFVSVMGNG 37


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +1

Query: 268 FLTFCLFWLILGTTGRILTG 327
           F+  CL  +  GTTG IL G
Sbjct: 5   FMLVCLGIVCQGTTGNILRG 24


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +1

Query: 268 FLTFCLFWLILGTTGRILTG 327
           F+  CL  +  GTTG IL G
Sbjct: 5   FMLVCLGIVCQGTTGNILRG 24


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +1

Query: 268 FLTFCLFWLILGTTGRILTG 327
           F+  CL  +  GTTG IL G
Sbjct: 5   FMLVCLGIVCQGTTGNILRG 24


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 20.6 bits (41), Expect = 9.8
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +1

Query: 247 YPNQTYNFLTFC 282
           YPN +YN + +C
Sbjct: 106 YPNWSYNDVKYC 117


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,595
Number of Sequences: 438
Number of extensions: 2794
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14109465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)