Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_O06
         (261 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit...    24   3.8  
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T...    24   3.8  
SPAC589.04 |||metaxin 1|Schizosaccharomyces pombe|chr 1|||Manual       23   5.1  
SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase G...    23   8.8  

>SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit
           Gpa2 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 354

 Score = 23.8 bits (49), Expect = 3.8
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = +3

Query: 39  RSSWLLFYGSIIQIVFICCVSNYDKLL 119
           R  W+  + ++  I+F   +++YDK L
Sbjct: 206 RRKWIYCFENVNSIIFCVSLNDYDKKL 232


>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 988

 Score = 23.8 bits (49), Expect = 3.8
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 29  KWK*IFVAFILWIYNTNSVYLL 94
           K K IF  FI W+YN+  + +L
Sbjct: 419 KRKQIFAEFIYWLYNSFIIPIL 440


>SPAC589.04 |||metaxin 1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 271

 Score = 23.4 bits (48), Expect = 5.1
 Identities = 11/18 (61%), Positives = 13/18 (72%), Gaps = 1/18 (5%)
 Frame = +2

Query: 197 WDINTIKTIKYPSQ-KRK 247
           W +N IK+I  PSQ KRK
Sbjct: 156 WPLNIIKSIGLPSQIKRK 173


>SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase
           Gde1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1076

 Score = 22.6 bits (46), Expect = 8.8
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +3

Query: 63  GSIIQIVFICCVSNYDKLL 119
           G +  +V  CCV +YD ++
Sbjct: 332 GPVPPLVLTCCVGDYDLIV 350


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 968,939
Number of Sequences: 5004
Number of extensions: 14899
Number of successful extensions: 34
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 51430850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)