Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_O06
         (261 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0589 + 10969195-10969325,10971135-10971607,10971894-109720...    27   1.6  
05_03_0561 - 15476484-15476649,15476814-15476893,15476971-154770...    26   4.8  
03_05_0816 + 27928812-27930059,27931007-27931111,27931197-279312...    25   8.4  

>09_02_0589 +
           10969195-10969325,10971135-10971607,10971894-10972032,
           10972645-10972722,10972886-10973055,10973199-10973467,
           10973655-10973781,10973964-10974035,10975084-10975273,
           10975480-10975879
          Length = 682

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 13/43 (30%), Positives = 19/43 (44%)
 Frame = -1

Query: 129 INITEVYRSLTHSK*TLFVL*IHRIKATKIYFHFLCNWNQPSC 1
           IN  E+Y  ++H   T F +    I A K+ +    NW    C
Sbjct: 181 INALEIYTLISHDNPTTFPVDFETIMAIKLEYGIKKNWMGDPC 223


>05_03_0561 -
           15476484-15476649,15476814-15476893,15476971-15477030,
           15477117-15477210,15477287-15477421,15477601-15477656,
           15478359-15478460,15478544-15478651,15479206-15479283,
           15479432-15479521,15480061-15480123
          Length = 343

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 7/31 (22%), Positives = 16/31 (51%)
 Frame = +3

Query: 27  ENGNRSSWLLFYGSIIQIVFICCVSNYDKLL 119
           +   R  W+  +  +  ++F   +S YD++L
Sbjct: 186 QRNERRKWIHLFEGVNAVIFCAAISEYDQML 216


>03_05_0816 + 27928812-27930059,27931007-27931111,27931197-27931262,
            27931337-27931501,27931671-27931745,27931829-27931983,
            27932234-27932369,27932454-27932523,27932602-27932729,
            27932838-27932894,27933326-27933511,27934031-27934123,
            27934488-27934573,27934668-27934734,27934873-27934939,
            27935016-27935152,27935618-27935709,27935849-27935915,
            27936058-27936078
          Length = 1006

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +3

Query: 144  HRNNYLPKCSSLFYNIRF 197
            H N YLPK  S+F  + F
Sbjct: 986  HNNQYLPKIVSIFAELEF 1003


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,329,867
Number of Sequences: 37544
Number of extensions: 72611
Number of successful extensions: 129
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 14,793,348
effective HSP length: 65
effective length of database: 12,352,988
effective search space used: 259412748
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)