Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_O04
(471 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo... 32 0.038
SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces po... 31 0.067
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce... 31 0.089
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces... 29 0.36
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple... 28 0.62
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch... 28 0.83
SPBC582.03 |cdc13||cyclin Cdc13|Schizosaccharomyces pombe|chr 2|... 27 1.1
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 27 1.4
SPBC800.10c |||EPS15 repeat family actin cortical patch componen... 26 2.5
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 26 2.5
SPBC24C6.10c |||conserved eukaryotic protein|Schizosaccharomyces... 26 3.3
SPAC631.01c |acp2||F-actin capping protein beta subunit |Schizos... 26 3.3
SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces ... 26 3.3
SPCC4G3.05c |mus81||Holliday junction resolvase subunit Mus81|Sc... 25 4.4
SPCC965.10 |||transcription factor |Schizosaccharomyces pombe|ch... 25 4.4
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 25 4.4
SPAC823.13c |||mitochondrial inner membrane protein|Schizosaccha... 25 5.8
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch... 25 5.8
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|... 25 5.8
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc... 25 7.7
SPAC1687.13c |csn5||COP9/signalosome complex subunit Csn5|Schizo... 25 7.7
>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1065
Score = 32.3 bits (70), Expect = 0.038
Identities = 18/65 (27%), Positives = 33/65 (50%)
Frame = +2
Query: 269 FTEESNKYNTALADKKKAQDEARDLAKELEKLRKVYADTRKTLEEEMLCRIDMANTVQSL 448
+ E++N +N ADKKK + + +DL +E + + D + L ++ + D N S
Sbjct: 235 YREKTNVFNQLRADKKKLKKDLKDLVEEFQPI----LDKGEELRSDLKLKDDTFNDYSSA 290
Query: 449 REELS 463
EL+
Sbjct: 291 SMELN 295
>SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 674
Score = 31.5 bits (68), Expect = 0.067
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +3
Query: 357 RNYVKCMQTRGRRWKRRCFAASIW 428
RNY+ + ++ RWKR C S+W
Sbjct: 15 RNYIPVVNSQNTRWKRLCGTQSVW 38
>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2104
Score = 31.1 bits (67), Expect = 0.089
Identities = 23/97 (23%), Positives = 38/97 (39%)
Frame = +2
Query: 29 REIQTTQEVVTREVSNIKGIYEHELQDARKLLDDTSREKANLEIDLKRLYEENXXXXXXX 208
+E+ +T +++ ++ + EH A L R K L L+ + E
Sbjct: 1624 KELTSTVNKYREQLAMVQSLNEH----AESSLSKAERSKNYLTGRLQEVEELARGFQTTN 1679
Query: 209 XXXXXXCQQAENLARHYETRFTEESNKYNTALADKKK 319
A + YE + E+SN YNT L K+K
Sbjct: 1680 ADLQNELADAVVKQKEYEVLYVEKSNDYNTLLLQKEK 1716
>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1526
Score = 29.1 bits (62), Expect = 0.36
Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Frame = +2
Query: 242 NLARHY-ETRFTEESNKYNTALADKKKAQDEARDLAKELEKLRKVYADTRKTLEEEMLCR 418
NL Y + T E K +A + +E R L ELE RK+ + +K LEE R
Sbjct: 1259 NLMHEYSQLGKTFEDEKRKALIASRDN--EELRSLKSELESKRKLEVEYQKVLEEVKTTR 1316
Query: 419 IDMANTVQSLREELS 463
+ + V LR +++
Sbjct: 1317 -SLRSEVTLLRNKVA 1330
>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1522
Score = 28.3 bits (60), Expect = 0.62
Identities = 15/57 (26%), Positives = 28/57 (49%)
Frame = +2
Query: 233 QAENLARHYETRFTEESNKYNTALADKKKAQDEARDLAKELEKLRKVYADTRKTLEE 403
QA N + + RF+ + YN+ L K Q + R + ++ +++A+ LEE
Sbjct: 351 QAINFVNNVKNRFSHKPEAYNSFLDILKSYQHDQRPIQLVYFQVSQLFAEAPDLLEE 407
>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1092
Score = 27.9 bits (59), Expect = 0.83
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +2
Query: 23 LRREIQTTQEVVTREVSNIKGIYEHELQDARKLLDDTSREKANLEIDLK 169
L+ + + + + EVSN+ Y E+ L RE ANL ++LK
Sbjct: 568 LQEKAASLERNKSSEVSNLLSRYNTEVAHLEDALHSKDRELANLGVELK 616
>SPBC582.03 |cdc13||cyclin Cdc13|Schizosaccharomyces pombe|chr
2|||Manual
Length = 482
Score = 27.5 bits (58), Expect = 1.1
Identities = 10/27 (37%), Positives = 13/27 (48%)
Frame = -2
Query: 413 KASPLPTSSACLHTLYVISRVPSRGPW 333
K P P S C +Y+ + RGPW
Sbjct: 369 KLLPYPPSQQCAAAMYLAREMLGRGPW 395
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 27.1 bits (57), Expect = 1.4
Identities = 22/68 (32%), Positives = 33/68 (48%)
Frame = +3
Query: 201 SAWTRKPRTVNKPRIWRAIMRRASQRRATNTILLSQIKRRLKMKPGTSRRNSRNYVKCMQ 380
S W+ + T+ K +++ S RR T LL K + KM G+ SR +CMQ
Sbjct: 2633 SDWSTEQDTLEKAT--KSLSPFTSLRRHTADALLYLNKTQRKM--GSVTEFSRIIDECMQ 2688
Query: 381 TRGRRWKR 404
RRW++
Sbjct: 2689 FSLRRWQQ 2696
>SPBC800.10c |||EPS15 repeat family actin cortical patch component
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1116
Score = 26.2 bits (55), Expect = 2.5
Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Frame = +2
Query: 260 ETRFTEESNKYNTALADKKKAQDE----ARDLAKELEKLRKVYADTRKTLEEEM 409
+ + E K + L+ KK+ D+ +RD+A L ++ ++ RK +EE+
Sbjct: 498 QLKLAAEVPKLESQLSQVKKSNDDLQKSSRDVAANLSDVKAKVSEIRKAYDEEL 551
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 26.2 bits (55), Expect = 2.5
Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 4/96 (4%)
Frame = +2
Query: 92 EHELQDARKLLDDTSREKANLEIDLKRLYEE-NXXXXXXXXXXXXXCQQAENLARHYETR 268
E +LQ+ K D ++ +L +++ L +E ++ ENL + TR
Sbjct: 1372 ETKLQETAKETDTFKQQVNSLNEEVENLKKEVEQANTKNTRLAAAWNEKCENLKKSSLTR 1431
Query: 269 FT---EESNKYNTALADKKKAQDEARDLAKELEKLR 367
F +E N L K A++EA + KE+E L+
Sbjct: 1432 FAHLKQELTNKNKELT-SKNAENEA--MQKEIESLK 1464
>SPBC24C6.10c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 374
Score = 25.8 bits (54), Expect = 3.3
Identities = 16/52 (30%), Positives = 28/52 (53%)
Frame = -3
Query: 259 IMARQILGLLTVLGFLVQALLQIIIFLVQSLQIDF*VSLLTRCIV*QFSSIL 104
I R+I + L L A LQ++I L+++ Q+ T+CIV +++L
Sbjct: 285 IFIREINNIPDELSDLRYAYLQVLIPLLENTQVRHPPHYKTKCIVDAVNNVL 336
>SPAC631.01c |acp2||F-actin capping protein beta subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 268
Score = 25.8 bits (54), Expect = 3.3
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +2
Query: 281 SNKYNTALADKKKAQDEARDLAKELEKLRKVYAD 382
SNKY+ L D + D R L L + +VY D
Sbjct: 74 SNKYDPPLEDGLVSTDRVRKLEVSLNEAIRVYLD 107
>SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 817
Score = 25.8 bits (54), Expect = 3.3
Identities = 19/129 (14%), Positives = 51/129 (39%), Gaps = 1/129 (0%)
Frame = +2
Query: 26 RREIQTTQEVVTREVSNIKGIYEHELQDARKLLDDTSRE-KANLEIDLKRLYEENXXXXX 202
+ E+Q+ +E + ++ + E ++ ++ D ++ + + ++R+ ++
Sbjct: 297 KNELQSAEEHFSHKIKELTSENELKISRLQEEKDSLLKKVQEGASLAMQRVQNKHDLEKK 356
Query: 203 XXXXXXXXCQQAENLARHYETRFTEESNKYNTALADKKKAQDEARDLAKELEKLRKVYAD 382
Q+ N + + E + K + D+ ++LE +
Sbjct: 357 RLQSAIQPLQEENNSLKQQIEQLQRELASETVVKENLKSSLDQQSANVQKLESTNRALES 416
Query: 383 TRKTLEEEM 409
T KTLEE++
Sbjct: 417 TIKTLEEDV 425
>SPCC4G3.05c |mus81||Holliday junction resolvase subunit
Mus81|Schizosaccharomyces pombe|chr 3|||Manual
Length = 608
Score = 25.4 bits (53), Expect = 4.4
Identities = 9/27 (33%), Positives = 19/27 (70%)
Frame = +2
Query: 65 EVSNIKGIYEHELQDARKLLDDTSREK 145
+V ++ GI++H + + +L+D T +EK
Sbjct: 281 QVDSLTGIHDHHIINNEQLIDLTEQEK 307
Score = 25.0 bits (52), Expect = 5.8
Identities = 12/57 (21%), Positives = 26/57 (45%)
Frame = +2
Query: 263 TRFTEESNKYNTALADKKKAQDEARDLAKELEKLRKVYADTRKTLEEEMLCRIDMAN 433
T + + N + + + ++ R + K + RKVY + ++ +LC + M N
Sbjct: 81 THNEQNDSHVNANKSSSETSSEKPRSVKKPTTRKRKVYVPSYRSGAYSILCALYMLN 137
>SPCC965.10 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 525
Score = 25.4 bits (53), Expect = 4.4
Identities = 15/56 (26%), Positives = 27/56 (48%)
Frame = +3
Query: 213 RKPRTVNKPRIWRAIMRRASQRRATNTILLSQIKRRLKMKPGTSRRNSRNYVKCMQ 380
+KPR+ I R++ ++ + L K+ + +PGT R+N + K MQ
Sbjct: 13 KKPRSRYGCLICRSMRKKCDEVHPQCGRCLKAGKQCIWKQPGTERKNKTKWRKAMQ 68
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 25.4 bits (53), Expect = 4.4
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = +2
Query: 230 QQAENLARHYETRFTEESNKYNTALADKKKAQDEARD 340
++ E L + YE E+ NKY K QDE D
Sbjct: 341 EREEELRKRYEQMKLEKMNKYQGVNLFIKNLQDEVDD 377
>SPAC823.13c |||mitochondrial inner membrane
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 317
Score = 25.0 bits (52), Expect = 5.8
Identities = 17/71 (23%), Positives = 30/71 (42%), Gaps = 8/71 (11%)
Frame = +2
Query: 239 ENLARHYETRFTEESNKYNTALADKKKAQDEARDLAK--------ELEKLRKVYADTRKT 394
E R + E +Y A+ + +Q E +L + +LE+ K+Y D
Sbjct: 58 ETKLRDFRLSAAEARKRYIEAVEKRSSSQREVNELLQRRSSWSTIDLERFTKLYRDDYSN 117
Query: 395 LEEEMLCRIDM 427
EEE+ + D+
Sbjct: 118 KEEEIKAQEDV 128
>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
Eme1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 25.0 bits (52), Expect = 5.8
Identities = 15/58 (25%), Positives = 26/58 (44%)
Frame = +2
Query: 251 RHYETRFTEESNKYNTALADKKKAQDEARDLAKELEKLRKVYADTRKTLEEEMLCRID 424
+ YE + ++K A++ R +KEL+K+ KV + L E +L D
Sbjct: 392 KRYEDSLKKSKTLDKVDSLNRKMAKELDRKNSKELQKINKVKRTKEECLSEIILLSPD 449
>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 534
Score = 25.0 bits (52), Expect = 5.8
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +2
Query: 230 QQAENLARHYETRFTEESNKYNTALADKKKAQDEARDLAKE 352
Q+ +N +R +RFTE+S + +A E+R KE
Sbjct: 9 QREDNYSRDRRSRFTEDSYSRRDSQRSGNEAPRESRYYRKE 49
>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1958
Score = 24.6 bits (51), Expect = 7.7
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +3
Query: 9 VKTLGCVVKYKPHRRSSHARYLTLKEFMSMSCKMLEN 119
+ T+ + P+R +H L++KEF+ CK L N
Sbjct: 1304 IATVTLATRANPYR--NHPHNLSMKEFLCPLCKALCN 1338
>SPAC1687.13c |csn5||COP9/signalosome complex subunit
Csn5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 299
Score = 24.6 bits (51), Expect = 7.7
Identities = 12/44 (27%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +2
Query: 59 TREVSNIKGIYEHE-LQDARKLLDDTSREKANLEIDLKRLYEEN 187
+R ++ + +E L D+ KL+D E N E+ + YE++
Sbjct: 233 SRSITECSILQNNEFLHDSEKLIDHLIHETGNNELPVASAYEQS 276
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,794,412
Number of Sequences: 5004
Number of extensions: 33471
Number of successful extensions: 172
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 180421690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -