Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_O04
         (471 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    27   0.077
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   2.9  
DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex det...    22   3.8  
DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex det...    22   3.8  
DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex det...    22   3.8  
DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex det...    22   3.8  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    21   5.0  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   5.0  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   5.0  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    21   8.8  

>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 27.5 bits (58), Expect = 0.077
 Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = -3

Query: 430 RHIDAAKHLLFQRLP-RVCIHFT*FLEFLREVPGFILSLLFICESSIVFVALLCE 269
           R++    HLL+Q +   + I F   + FLR      + L F+  + +V VA++CE
Sbjct: 45  RYMFTYLHLLYQDVHVMIWIGFGFLMTFLRRYGQSAVGLTFLLGAILVQVAIICE 99


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = +3

Query: 333 PGTSRRNSRNYVKCMQTRGRRW 398
           P  S R SR  V+C    G RW
Sbjct: 10  PVKSFRESRCSVRCSAASGLRW 31


>DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 9/33 (27%), Positives = 19/33 (57%)
 Frame = +2

Query: 308 DKKKAQDEARDLAKELEKLRKVYADTRKTLEEE 406
           ++  ++D  R+  K+  +  K+Y +  K LEE+
Sbjct: 1   ERSCSRDRNREYRKKDRQYEKLYNEKEKFLEEK 33


>DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 9/33 (27%), Positives = 19/33 (57%)
 Frame = +2

Query: 308 DKKKAQDEARDLAKELEKLRKVYADTRKTLEEE 406
           ++  ++D  R+  K+  +  K+Y +  K LEE+
Sbjct: 1   ERSCSRDRNREYRKKDRQYEKLYNEKEKFLEEK 33


>DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 9/33 (27%), Positives = 19/33 (57%)
 Frame = +2

Query: 308 DKKKAQDEARDLAKELEKLRKVYADTRKTLEEE 406
           ++  ++D  R+  K+  +  K+Y +  K LEE+
Sbjct: 1   ERSCSRDRNREYRKKDRQYEKLYNEKEKFLEEK 33


>DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 9/33 (27%), Positives = 19/33 (57%)
 Frame = +2

Query: 308 DKKKAQDEARDLAKELEKLRKVYADTRKTLEEE 406
           ++  ++D  R+  K+  +  K+Y +  K LEE+
Sbjct: 1   ERSCSRDRNREYRKKDRQYEKLYNEKEKFLEEK 33


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = +2

Query: 284 NKYNTALADKKKAQDEARDLAKELEKLRKVYADTRKTLEEE 406
           N YN +   +   + E +   +E+EK + V A+   T E++
Sbjct: 376 NIYNASSRMENNLRGETQSNYREMEKRQSVPANDLLTTEKD 416


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -3

Query: 100 LMLINSFNVRYLACDDLLCGLYFTTQ 23
           L ++ +FN  Y + D L  GL+ +T+
Sbjct: 260 LTVLRTFNASYNSLDSLPEGLFASTR 285


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 12/56 (21%), Positives = 24/56 (42%)
 Frame = +2

Query: 296  TALADKKKAQDEARDLAKELEKLRKVYADTRKTLEEEMLCRIDMANTVQSLREELS 463
            T +   ++A  EAR+  ++    +++    R     + LCR      V  L ++ S
Sbjct: 1294 TGIPRDQRAMTEARNQQQQASSQQQIPESMRSKALIDQLCRNSRRTPVPRLAQDSS 1349


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 20.6 bits (41), Expect = 8.8
 Identities = 8/32 (25%), Positives = 18/32 (56%)
 Frame = +2

Query: 308 DKKKAQDEARDLAKELEKLRKVYADTRKTLEE 403
           ++  ++D  R+  ++  +  K+Y +  K LEE
Sbjct: 1   ERSCSKDRNREYKEKDRRYEKLYNEKEKLLEE 32


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,736
Number of Sequences: 438
Number of extensions: 2528
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12682287
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)