Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_O03
         (687 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31G5.14 |gcv1|n313|glycine decarboxylase T subunit|Schizosac...    28   1.5  
SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA syntheta...    28   1.5  
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom...    26   5.9  
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce...    25   7.8  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    25   7.8  

>SPAC31G5.14 |gcv1|n313|glycine decarboxylase T
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 387

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -1

Query: 417 HEYLFKVAHCVHVFVGGENASXW 349
           H  LF V+H V  FV GENA+ +
Sbjct: 65  HSGLFDVSHMVQWFVRGENATAY 87


>SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA synthetases
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 450

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = +3

Query: 105 QRIKTRKRDEKEKYDPNGFRDALVQGLERAGGDLDAAYKFLDSAGSKLD 251
           QR    K+D+KEK +    ++A V+ +E+A   L+ A K   +   K D
Sbjct: 208 QRPSVIKKDKKEKKEGKPSQEASVKSVEKAPKGLEGAKKEKQNKKEKKD 256


>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 204

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -3

Query: 376 RWRRKCKXLVLGDSPSIDTDPPGSRRPPAISTS 278
           +W    + L +   PS+D   P S  PP+ S S
Sbjct: 37  QWECPVRGLTIPPPPSVDHSAPPSGPPPSYSNS 69


>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1131

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = -3

Query: 454  TFSPGICTDASVSRIPVQSCALCPCLRWRRKCKXLVLGDSPSIDTDPPGS 305
            +++P +   A  S  PV   A  P  RW +KC+  V G+S  +    P S
Sbjct: 934  SWTPDVYVPAEESE-PVCGIAQLPPNRWEKKCE--VCGNSFGVCVSSPNS 980


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 17/47 (36%), Positives = 25/47 (53%)
 Frame = +1

Query: 142 SMTLTGSATPLSRVWSARAVISTRLTNS*IRLARNSTTGAMARSYSM 282
           S+  T SAT  S   S+ A  ++  ++S    + NSTT A A S S+
Sbjct: 199 SLNSTTSATATSSSLSSTAASNSATSSSLASSSLNSTTSATATSSSI 245


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,374,244
Number of Sequences: 5004
Number of extensions: 44010
Number of successful extensions: 138
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)