Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_O03
         (687 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U27312-10|AAA68253.1|  231|Caenorhabditis elegans Hypothetical p...    30   1.8  
Z47068-6|CAA87334.2|  272|Caenorhabditis elegans Hypothetical pr...    29   3.1  
AC024810-8|AAU20830.1| 1446|Caenorhabditis elegans Hypothetical ...    28   5.4  
AF099921-1|AAC68807.1| 1286|Caenorhabditis elegans Hypothetical ...    28   7.2  
Z47811-1|CAA87785.3|  201|Caenorhabditis elegans Hypothetical pr...    27   9.5  

>U27312-10|AAA68253.1|  231|Caenorhabditis elegans Hypothetical
           protein F26A1.12 protein.
          Length = 231

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 17/38 (44%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = +2

Query: 221 IPRFGWLETRLPALWR-GHIRCAYRRRSPAARWVGVDG 331
           I R G LE  LP  W+ G IR   R+ S  A W   DG
Sbjct: 124 IARLG-LEKMLPTGWKYGTIRVGLRKNSQGAPWYNTDG 160


>Z47068-6|CAA87334.2|  272|Caenorhabditis elegans Hypothetical
           protein F15G9.5 protein.
          Length = 272

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 17/52 (32%), Positives = 26/52 (50%)
 Frame = -3

Query: 472 SSFLLRTFSPGICTDASVSRIPVQSCALCPCLRWRRKCKXLVLGDSPSIDTD 317
           S+ +  T SPG   D  + ++ V +    PC R+      L++ D PSID D
Sbjct: 140 SNSVCHTKSPGSVCDRKMEKLCVDNTCENPCARY---APHLMVCDCPSIDQD 188


>AC024810-8|AAU20830.1| 1446|Caenorhabditis elegans Hypothetical
            protein Y54E10A.11 protein.
          Length = 1446

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 1/78 (1%)
 Frame = +1

Query: 304  CCPVGRCRWTGNPPRPXTCIFSANEDMDTMRNFEQVFVKLMRRYKYLEKMFEEEMKKVLV 483
            CC       T   P         +EDMDT    E +++K     +Y+EK+FE    +   
Sbjct: 855  CCAPNFITDTYGIPEKRQKFEEYSEDMDT--KIETIYLKTDTPLEYVEKVFEASQSENSF 912

Query: 484  YLTGFEPQQRIK-LARMT 534
             L  F+  ++ + LA +T
Sbjct: 913  PLFQFDQSKKYEWLANLT 930


>AF099921-1|AAC68807.1| 1286|Caenorhabditis elegans Hypothetical
           protein M01E10.2 protein.
          Length = 1286

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -3

Query: 334 PSIDTDPPGSRRPPAISTSNMTSP*RR*SSFEP 236
           P+I T PP ++ PP   TS+ T   R   ++ P
Sbjct: 369 PTIQTPPPTTQTPPTTQTSSTTQTPRTKQTWAP 401


>Z47811-1|CAA87785.3|  201|Caenorhabditis elegans Hypothetical
           protein K02C4.2 protein.
          Length = 201

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +3

Query: 159 FRDALVQGLERAGGDLDAAYKFLDSAGSKLDYRRYGEVIFDVLIAG 296
           FRD ++  +E   GD D + +F++   +     R GE +F+ L  G
Sbjct: 99  FRDIMISTIEDKIGDFDESRQFMNKKAA-----RQGECVFECLYPG 139


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,348,123
Number of Sequences: 27780
Number of extensions: 266200
Number of successful extensions: 867
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 821
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 867
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)