Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_O01
         (123 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1D4.13 |byr1|ste1, ste3|MAP kinase kinase Byr1|Schizosacchar...    26   0.79 
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc...    24   3.2  
SPBC17G9.02c |||RNA polymerase II accessory factor, Cdc73 family...    23   5.6  
SPAC1296.04 |mug65||spore wall assembly protein |Schizosaccharom...    23   5.6  
SPAC26F1.05 |mug106||sequence orphan|Schizosaccharomyces pombe|c...    23   5.6  
SPAC6B12.03c |||HbrB family protein|Schizosaccharomyces pombe|ch...    23   7.4  
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy...    22   9.7  

>SPAC1D4.13 |byr1|ste1, ste3|MAP kinase kinase
           Byr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 340

 Score = 25.8 bits (54), Expect = 0.79
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +3

Query: 54  PYFTQSKMGREDKATWKSNY 113
           PYF Q+ M   D A+W SN+
Sbjct: 318 PYFQQALMINVDLASWASNF 337


>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
           Apc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1458

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 8/26 (30%), Positives = 12/26 (46%)
 Frame = +1

Query: 4   WQEFGTRFVLSLNFSEVPTSLNPRWV 81
           W EF     L L+ S+    +N  W+
Sbjct: 801 WPEFNVGVALGLSISKFSKEINTSWI 826


>SPBC17G9.02c |||RNA polymerase II accessory factor, Cdc73
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 371

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -1

Query: 75  SWIE*SRDFGEI*GQDKPRAE 13
           SW+E S D   I G +KP+ E
Sbjct: 105 SWLEGSSDSEHIIGLEKPKPE 125


>SPAC1296.04 |mug65||spore wall assembly protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 248

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +3

Query: 54  PYFTQSKMGREDKATWKSNYFV 119
           PYF++  +   D A W   +FV
Sbjct: 26  PYFSEKSLLNFDPAPWVDQHFV 47


>SPAC26F1.05 |mug106||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 115

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 14/30 (46%), Positives = 15/30 (50%), Gaps = 3/30 (10%)
 Frame = +3

Query: 42  FLRSPYFTQSKM---GREDKATWKSNYFVK 122
           F     FT+ K    GR  KAT K NY VK
Sbjct: 54  FSNGALFTEGKARDRGRWAKATMKKNYGVK 83


>SPAC6B12.03c |||HbrB family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 302

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 8/29 (27%), Positives = 12/29 (41%)
 Frame = +3

Query: 36  LKFLRSPYFTQSKMGREDKATWKSNYFVK 122
           L     P F Q +   +DK  WK    ++
Sbjct: 103 LNIAMRPIFPQHRYTEQDKKNWKKKVIIE 131


>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1115

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +1

Query: 31  LSLNFSEVPTSLNPRWVGRTRLPGS 105
           LSL   EV   L+PR  G  +LP S
Sbjct: 23  LSLTDEEVRRILSPRKEGSRQLPSS 47


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 575,382
Number of Sequences: 5004
Number of extensions: 6949
Number of successful extensions: 23
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 2,362,478
effective HSP length: 21
effective length of database: 2,257,394
effective search space used: 42890486
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)