Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_O01
         (123 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79754-9|CAB02098.1|  312|Caenorhabditis elegans Hypothetical pr...    31   0.11 
AC006747-5|AAF60510.3|  310|Caenorhabditis elegans Hypothetical ...    25   5.6  
U41508-3|AAN39664.1|  317|Caenorhabditis elegans Set (trithorax/...    25   7.4  
U41508-2|AAN39665.2|  552|Caenorhabditis elegans Set (trithorax/...    25   7.4  

>Z79754-9|CAB02098.1|  312|Caenorhabditis elegans Hypothetical
           protein F25H2.10 protein.
          Length = 312

 Score = 31.1 bits (67), Expect = 0.11
 Identities = 11/16 (68%), Positives = 14/16 (87%)
 Frame = +3

Query: 75  MGREDKATWKSNYFVK 122
           M RED++TWK+NYF K
Sbjct: 1   MVREDRSTWKANYFTK 16


>AC006747-5|AAF60510.3|  310|Caenorhabditis elegans Hypothetical
           protein Y39A3A.3 protein.
          Length = 310

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -2

Query: 71  GLSEVGTSEKFKDKTNLVP 15
           GLSE GT+ K K+ T ++P
Sbjct: 242 GLSETGTTYKMKNVTKILP 260


>U41508-3|AAN39664.1|  317|Caenorhabditis elegans Set
           (trithorax/polycomb) domaincontaining protein 20,
           isoform a protein.
          Length = 317

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +1

Query: 37  LNFSEVPTSLNPRWVG 84
           L   E P SLNPR+VG
Sbjct: 177 LELHETPLSLNPRYVG 192


>U41508-2|AAN39665.2|  552|Caenorhabditis elegans Set
           (trithorax/polycomb) domaincontaining protein 20,
           isoform b protein.
          Length = 552

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +1

Query: 37  LNFSEVPTSLNPRWVG 84
           L   E P SLNPR+VG
Sbjct: 412 LELHETPLSLNPRYVG 427


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,129,805
Number of Sequences: 27780
Number of extensions: 37015
Number of successful extensions: 110
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 12,740,198
effective HSP length: 21
effective length of database: 12,156,818
effective search space used: 230979542
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)