Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_N23
         (494 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...   251   3e-69
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...   251   3e-69
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   1.3  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    22   4.1  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           21   7.2  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    21   9.5  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   9.5  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    21   9.5  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  251 bits (615), Expect = 3e-69
 Identities = 115/131 (87%), Positives = 123/131 (93%)
 Frame = +1

Query: 7   EGLTGLYRGFGVSVQGIIIYRAAYFGFYDTARGMLPDPKNTPIVISWAIAQTVTTVAGII 186
           +G+TGLYRGFGVSVQGIIIYRAAYFGFYDTARGMLPDPK TP +ISW IAQ VTTVAGI+
Sbjct: 170 DGITGLYRGFGVSVQGIIIYRAAYFGFYDTARGMLPDPKKTPFLISWGIAQVVTTVAGIV 229

Query: 187 SYPFDTVRRRMMMQSGRAKSDILYKNTIHCWATIAKTEGGAAFFKGAFSNVLRGTGGAFV 366
           SYPFDTVRRRMMMQSGRAKS+ILYK+T+HCWATI KTEGG AFFKGAFSN+LRGTGGA V
Sbjct: 230 SYPFDTVRRRMMMQSGRAKSEILYKSTLHCWATIYKTEGGNAFFKGAFSNILRGTGGALV 289

Query: 367 LVLYDEIKKLL 399
           LVLYDEIK LL
Sbjct: 290 LVLYDEIKNLL 300



 Score = 31.9 bits (69), Expect = 0.004
 Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
 Frame = +1

Query: 148 AIAQTVTTVAGIISYPFDTVRRRMMMQ--SGRAKSDILYKNTIHCWATIAKTEGGAAFFK 321
           A A + TTVA     P + V+  + +Q  S +   +  YK  I C+  I K +G  ++++
Sbjct: 20  AAAISKTTVA-----PIERVKLLLQVQHISKQISEEQRYKGMIDCFVRIPKEQGFLSYWR 74

Query: 322 GAFSNVLR 345
           G  +NV+R
Sbjct: 75  GNLANVIR 82



 Score = 27.1 bits (57), Expect = 0.11
 Identities = 12/45 (26%), Positives = 20/45 (44%)
 Frame = +1

Query: 190 YPFDTVRRRMMMQSGRAKSDILYKNTIHCWATIAKTEGGAAFFKG 324
           YP D  R R+    G+A  +  +    +C   I K +G    ++G
Sbjct: 134 YPLDFARTRLAADVGKAGGEREFTGLGNCLTKIFKADGITGLYRG 178


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  251 bits (615), Expect = 3e-69
 Identities = 115/131 (87%), Positives = 123/131 (93%)
 Frame = +1

Query: 7   EGLTGLYRGFGVSVQGIIIYRAAYFGFYDTARGMLPDPKNTPIVISWAIAQTVTTVAGII 186
           +G+TGLYRGFGVSVQGIIIYRAAYFGFYDTARGMLPDPK TP +ISW IAQ VTTVAGI+
Sbjct: 170 DGITGLYRGFGVSVQGIIIYRAAYFGFYDTARGMLPDPKKTPFLISWGIAQVVTTVAGIV 229

Query: 187 SYPFDTVRRRMMMQSGRAKSDILYKNTIHCWATIAKTEGGAAFFKGAFSNVLRGTGGAFV 366
           SYPFDTVRRRMMMQSGRAKS+ILYK+T+HCWATI KTEGG AFFKGAFSN+LRGTGGA V
Sbjct: 230 SYPFDTVRRRMMMQSGRAKSEILYKSTLHCWATIYKTEGGNAFFKGAFSNILRGTGGALV 289

Query: 367 LVLYDEIKKLL 399
           LVLYDEIK LL
Sbjct: 290 LVLYDEIKNLL 300



 Score = 31.9 bits (69), Expect = 0.004
 Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
 Frame = +1

Query: 148 AIAQTVTTVAGIISYPFDTVRRRMMMQ--SGRAKSDILYKNTIHCWATIAKTEGGAAFFK 321
           A A + TTVA     P + V+  + +Q  S +   +  YK  I C+  I K +G  ++++
Sbjct: 20  AAAISKTTVA-----PIERVKLLLQVQHISKQISEEQRYKGMIDCFVRIPKEQGFLSYWR 74

Query: 322 GAFSNVLR 345
           G  +NV+R
Sbjct: 75  GNLANVIR 82



 Score = 27.1 bits (57), Expect = 0.11
 Identities = 12/45 (26%), Positives = 20/45 (44%)
 Frame = +1

Query: 190 YPFDTVRRRMMMQSGRAKSDILYKNTIHCWATIAKTEGGAAFFKG 324
           YP D  R R+    G+A  +  +    +C   I K +G    ++G
Sbjct: 134 YPLDFARTRLAADVGKAGGEREFTGLGNCLTKIFKADGITGLYRG 178


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +3

Query: 129 PHRHQLGHRANRHHSRRYH 185
           PH H +GH  +  H+  +H
Sbjct: 414 PHHHTMGHGHSHIHATPHH 432


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 14/49 (28%), Positives = 21/49 (42%)
 Frame = +3

Query: 123 EHPHRHQLGHRANRHHSRRYHLVSIRHGS*AYDDAVRPCQERHSLQEHH 269
           EHPH+HQ  + A     ++    S++  S    D   P   R  +  HH
Sbjct: 19  EHPHQHQQHYGAAVQVPQQTQ--SVQQQSQQAGDPCDPSLLRQGVPGHH 65


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +1

Query: 199 DTVRRRMMMQSGRAKSDILYKNTI 270
           DT+ R+ ++   + K D LY N +
Sbjct: 289 DTLIRKYIIPKEQVKEDSLYTNIV 312


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +2

Query: 311 PSSRAPSRTCSEVP 352
           P  RAPS  C+E P
Sbjct: 113 PGMRAPSFRCTERP 126


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -1

Query: 332  EKAPLKKAAPPSVLA 288
            E APL  A PP V++
Sbjct: 1106 ENAPLPPALPPQVVS 1120


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +2

Query: 311 PSSRAPSRTCSEVP 352
           P  RAPS  C+E P
Sbjct: 113 PGMRAPSFRCTERP 126


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,694
Number of Sequences: 438
Number of extensions: 3390
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13667319
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)