Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_N21
         (491 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC10H11.02 |cwf23|SPCP31B10.01|DNAJ domain protein Cwf23|Schiz...    25   4.7  
SPAPB1A10.09 |ase1||microtubule-associated protein Ase1 |Schizos...    25   4.7  
SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr 1|||...    25   4.7  
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces...    25   6.2  
SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr...    25   8.2  

>SPCC10H11.02 |cwf23|SPCP31B10.01|DNAJ domain protein
           Cwf23|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 289

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
 Frame = -3

Query: 453 EDAFTFQRSRRVD--FEREQEFK*NLYLSKND 364
           E+AF FQR   VD   ERE++F  +L   +N+
Sbjct: 84  EEAFNFQRKSMVDDLRERERQFYDSLEKKENE 115


>SPAPB1A10.09 |ase1||microtubule-associated protein Ase1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 731

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +2

Query: 392 LNSCSRSKSTRRERWNVNASSANQS 466
           LNS SRS+S    R   N S +N S
Sbjct: 563 LNSASRSRSANMIRQGANGSDSNMS 587


>SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 600

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 15/43 (34%), Positives = 19/43 (44%)
 Frame = +3

Query: 87  GRPPHLVWGRHGVAFASTASQSPST*HKHWHYLHKNCLSNNCL 215
           GR   L W       AST +  P + HK WH +   C +N  L
Sbjct: 333 GRKLDLQWVEASHLEASTNTSDPLSYHKAWHLV---CSANGIL 372


>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 25.0 bits (52), Expect = 6.2
 Identities = 11/15 (73%), Positives = 12/15 (80%)
 Frame = +3

Query: 90  RPPHLVWGRHGVAFA 134
           R PHLV  RHGVAF+
Sbjct: 284 RLPHLVAIRHGVAFS 298


>SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 877

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -1

Query: 140 GACESHPMSPPYQMRRTAPGGFR 72
           G C+    +PP  +  T P GFR
Sbjct: 351 GVCKHRRENPPISILGTVPSGFR 373


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,999,146
Number of Sequences: 5004
Number of extensions: 39965
Number of successful extensions: 116
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 192109570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)