Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_N21
         (491 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0780 + 23094989-23095380,23096132-23096573,23096687-230973...    31   0.50 
12_02_1060 - 25752181-25754229                                         31   0.66 
11_04_0221 + 15021145-15022497                                         29   2.0  
09_02_0124 - 4546722-4547107,4547677-4547854,4548027-4548215,454...    29   2.0  
01_06_1477 + 37645143-37647425                                         29   2.7  
06_03_0385 - 20234160-20234798,20234888-20235238                       28   3.5  
06_03_0064 + 16134243-16134881                                         28   4.7  
08_01_0529 + 4589434-4589652,4589897-4589953,4590106-4590237           27   8.2  

>12_02_0780 +
           23094989-23095380,23096132-23096573,23096687-23097311,
           23098240-23098280,23098371-23098439,23098779-23098879,
           23099422-23099500,23099946-23100044,23100123-23100191,
           23100283-23100332,23100416-23100497,23100997-23101091,
           23101263-23101395
          Length = 758

 Score = 31.1 bits (67), Expect = 0.50
 Identities = 21/46 (45%), Positives = 24/46 (52%)
 Frame = -1

Query: 146 RRGACESHPMSPPYQMRRTAPGGFRGYFRALHARVSPTLARSSSLR 9
           RRGA    P  PP   RR + GGF G  RA  AR S +   SS L+
Sbjct: 47  RRGAAPPPPHQPPLPARRLS-GGFEGGARA-WARGSASFPHSSPLQ 90


>12_02_1060 - 25752181-25754229
          Length = 682

 Score = 30.7 bits (66), Expect = 0.66
 Identities = 16/43 (37%), Positives = 29/43 (67%)
 Frame = +1

Query: 154 PPPNISIGIICTKTV*AIIAYVITVHCTVIFFLLFRKTKFSXL 282
           PPP++SIG++   TV A +++V+ +  + I+ LL R+ K + L
Sbjct: 273 PPPSVSIGLVAGLTVGA-VSFVVVLGVS-IWLLLHRRRKHAGL 313


>11_04_0221 + 15021145-15022497
          Length = 450

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
 Frame = +2

Query: 26  VPVWDSPGREAPGNTL*NPPGPSAAFGM---GATWGGFRKHRVAKSL 157
           V  WDSP R+AP  T   PP    ++ +   GA W   R+  +A+ +
Sbjct: 327 VAEWDSPARDAPRTTPPPPPPVHVSYHLGRQGADW-AVRREEMARRI 372


>09_02_0124 -
           4546722-4547107,4547677-4547854,4548027-4548215,
           4548602-4548712,4549024-4549071,4549825-4549966,
           4550349-4550695
          Length = 466

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 16/38 (42%), Positives = 19/38 (50%)
 Frame = +3

Query: 3   RGTEGRTPCQCGTHPGVKRPEIPSKTPRGRPPHLVWGR 116
           RG + RT CQ G     K   +PSK  R   P +VW R
Sbjct: 416 RGGDNRTSCQQGRG---KSHRLPSKCKRRLHPRVVWER 450


>01_06_1477 + 37645143-37647425
          Length = 760

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = -3

Query: 240 YGTVYGDYVSNYCLNSFCANNANAYVRWRDFATRC 136
           Y  V GDYV   C   +  ++  A  +W  +A  C
Sbjct: 605 YDAVPGDYVELMCAMGYNLSDIRAVTQWSTYAVNC 639


>06_03_0385 - 20234160-20234798,20234888-20235238
          Length = 329

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = -3

Query: 207 YCLNSFCANNANAYVRWRDFATRCL-RKPPHVAPIPNAA 94
           YC N  C  N N+ V  +D  +R     PP   P+ ++A
Sbjct: 281 YCPNKICTANGNSKVTIKDITSRISPAPPPRPRPLASSA 319


>06_03_0064 + 16134243-16134881
          Length = 212

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +1

Query: 70  PLKPPGAVRRIWYGGDMGWLSQAPRRKVPPPNISIGI 180
           P+KPP A  R    G  G    AP+ + PPP + +G+
Sbjct: 125 PVKPPTAAGRQGGSGGDGGGGSAPQPR-PPPAVPLGV 160


>08_01_0529 + 4589434-4589652,4589897-4589953,4590106-4590237
          Length = 135

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 18/54 (33%), Positives = 22/54 (40%)
 Frame = -3

Query: 201 LNSFCANNANAYVRWRDFATRCLRKPPHVAPIPNAADGPGGF*RVFPGASRPGE 40
           ++  CA    A VR    AT   R+PPH    P  + G G    V P A    E
Sbjct: 6   VSRLCARAVQAAVRAEQPATT-RRRPPHAGRPPPPSSGGGSPAEVAPAAKSVAE 58


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,199,302
Number of Sequences: 37544
Number of extensions: 280969
Number of successful extensions: 1022
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 990
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1021
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1023611560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)