Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_N21
(491 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z37983-6|CAB54188.2| 133|Caenorhabditis elegans Hypothetical pr... 29 2.4
U40935-8|AAA81692.2| 133|Caenorhabditis elegans Hypothetical pr... 29 2.4
AL110472-1|CAB54318.2| 133|Caenorhabditis elegans Hypothetical ... 29 2.4
Z83228-2|CAB05733.1| 370|Caenorhabditis elegans Hypothetical pr... 28 4.2
U40029-11|AAA81130.1| 914|Caenorhabditis elegans Tudor staphylo... 27 5.6
Z74033-4|CAA98471.2| 822|Caenorhabditis elegans Hypothetical pr... 27 9.8
AL021171-3|CAB54258.1| 749|Caenorhabditis elegans Hypothetical ... 27 9.8
AL021171-2|CAA15957.1| 747|Caenorhabditis elegans Hypothetical ... 27 9.8
AC024772-2|AAF60537.2| 756|Caenorhabditis elegans Osm-9 and cap... 27 9.8
AB095019-1|BAC22611.1| 822|Caenorhabditis elegans ubiquitin-spe... 27 9.8
>Z37983-6|CAB54188.2| 133|Caenorhabditis elegans Hypothetical
protein B0393.8 protein.
Length = 133
Score = 28.7 bits (61), Expect = 2.4
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +3
Query: 216 RNHRTLYRNIFFIIPKNKILRSTYKFLIFIILI 314
R HR++ R F+ N IL+ST KF+ IL+
Sbjct: 61 RLHRSIGRLRVFLTDDNSILKSTNKFIKMYILV 93
>U40935-8|AAA81692.2| 133|Caenorhabditis elegans Hypothetical
protein F31E3.6 protein.
Length = 133
Score = 28.7 bits (61), Expect = 2.4
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +3
Query: 216 RNHRTLYRNIFFIIPKNKILRSTYKFLIFIILI 314
R HR++ R F+ N IL+ST KF+ IL+
Sbjct: 61 RLHRSIGRLRVFLTDDNSILKSTNKFIKMYILV 93
>AL110472-1|CAB54318.2| 133|Caenorhabditis elegans Hypothetical
protein VB0393L.2 protein.
Length = 133
Score = 28.7 bits (61), Expect = 2.4
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +3
Query: 216 RNHRTLYRNIFFIIPKNKILRSTYKFLIFIILI 314
R HR++ R F+ N IL+ST KF+ IL+
Sbjct: 61 RLHRSIGRLRVFLTDDNSILKSTNKFIKMYILV 93
>Z83228-2|CAB05733.1| 370|Caenorhabditis elegans Hypothetical
protein F52F12.2 protein.
Length = 370
Score = 27.9 bits (59), Expect = 4.2
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +3
Query: 18 RTPCQCGTHPGVKRPEIPSKTPRGRP 95
+ PC C T P + P P PRGRP
Sbjct: 76 KDPCDCDTGPAINCPVGP-HGPRGRP 100
>U40029-11|AAA81130.1| 914|Caenorhabditis elegans Tudor
staphylococcal nuclease homologprotein 1 protein.
Length = 914
Score = 27.5 bits (58), Expect = 5.6
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = -2
Query: 136 LAKATPCRPHTKCGGRPRGVLEGISG 59
LAKA P+ + GGR GV+E +SG
Sbjct: 510 LAKAKQFLPYLQRGGRAEGVVEFLSG 535
>Z74033-4|CAA98471.2| 822|Caenorhabditis elegans Hypothetical
protein F38B7.5 protein.
Length = 822
Score = 26.6 bits (56), Expect = 9.8
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +1
Query: 91 VRRIWYGGDMGWLSQAPRRKVPP 159
V I Y GD GW+ +P+ PP
Sbjct: 678 VEIITYLGDSGWVPHSPQNNYPP 700
>AL021171-3|CAB54258.1| 749|Caenorhabditis elegans Hypothetical
protein H04D03.2b protein.
Length = 749
Score = 26.6 bits (56), Expect = 9.8
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +3
Query: 129 FASTASQ-SPST*HKHWHYLHKNCLSNNCLRNHRTLYR 239
F ST P H W Y++KN +++N N L+R
Sbjct: 5 FPSTRKALEPKDEHSLWKYIYKNTVTSNNFPNMLELFR 42
>AL021171-2|CAA15957.1| 747|Caenorhabditis elegans Hypothetical
protein H04D03.2a protein.
Length = 747
Score = 26.6 bits (56), Expect = 9.8
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +3
Query: 129 FASTASQ-SPST*HKHWHYLHKNCLSNNCLRNHRTLYR 239
F ST P H W Y++KN +++N N L+R
Sbjct: 5 FPSTRKALEPKDEHSLWKYIYKNTVTSNNFPNMLELFR 42
>AC024772-2|AAF60537.2| 756|Caenorhabditis elegans Osm-9 and
capsaicin receptor-relatedprotein 4 protein.
Length = 756
Score = 26.6 bits (56), Expect = 9.8
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +3
Query: 42 HPGVKRPEIPSKTPRGRPPHLVWGRHGVAFASTASQ 149
HP V+ I T P H+ WG + ++FA+ SQ
Sbjct: 202 HPEVEHAIISKHTKY--PGHIYWGEYPLSFAACLSQ 235
>AB095019-1|BAC22611.1| 822|Caenorhabditis elegans
ubiquitin-specific protease protein.
Length = 822
Score = 26.6 bits (56), Expect = 9.8
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +1
Query: 91 VRRIWYGGDMGWLSQAPRRKVPP 159
V I Y GD GW+ +P+ PP
Sbjct: 678 VEIITYLGDSGWVPHSPQNNYPP 700
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,273,192
Number of Sequences: 27780
Number of extensions: 241984
Number of successful extensions: 731
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 708
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 731
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 924715866
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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