Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_N21
         (491 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    22   3.1  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    21   7.1  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    21   7.1  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   7.1  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    21   9.4  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   9.4  

>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +3

Query: 45  PGVKRPEIPSKTPRGRP 95
           PG   PE+  K P G+P
Sbjct: 76  PGYLSPEVLKKEPYGKP 92


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = +3

Query: 171 HWHYLHKNCLSNNCLRNHRTLYRNIFFIIPKNKIL 275
           ++ Y + N  +NN   N+   Y N +  + KN I+
Sbjct: 88  NYKYSNYNNYNNNYNNNYNNNYNNNYKKLYKNYII 122



 Score = 20.6 bits (41), Expect = 9.4
 Identities = 7/26 (26%), Positives = 16/26 (61%)
 Frame = +3

Query: 165 HKHWHYLHKNCLSNNCLRNHRTLYRN 242
           + +++  + N  +NN   N++ LY+N
Sbjct: 94  YNNYNNNYNNNYNNNYNNNYKKLYKN 119


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = +3

Query: 171 HWHYLHKNCLSNNCLRNHRTLYRNIFFIIPKNKIL 275
           ++ Y + N  +NN   N+   Y N +  + KN I+
Sbjct: 88  NYKYSNYNNYNNNYNNNYNNNYNNNYKKLYKNYII 122



 Score = 20.6 bits (41), Expect = 9.4
 Identities = 7/26 (26%), Positives = 16/26 (61%)
 Frame = +3

Query: 165 HKHWHYLHKNCLSNNCLRNHRTLYRN 242
           + +++  + N  +NN   N++ LY+N
Sbjct: 94  YNNYNNNYNNNYNNNYNNNYKKLYKN 119


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +3

Query: 189  KNCLSNNCLRNHRTLYRNI 245
            K+   ++C+R  RT  RN+
Sbjct: 1643 KSLQDHDCIRQERTQQRNV 1661


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 407 RSKSTRRERWNVNASSANQSVLN 475
           R  +T+R  + +  S  NQ+VLN
Sbjct: 366 RVNNTQRNEYLLALSDRNQNVLN 388


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +3

Query: 93  PPHLVWGRHG 122
           PP LVW R+G
Sbjct: 339 PPPLVWRRNG 348


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,379
Number of Sequences: 438
Number of extensions: 3048
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13544190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)