Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_N19
         (271 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    25   1.9  
SPBC428.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    24   4.3  
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac...    23   7.5  
SPBC365.01 |||sec14 cytosolic factor family |Schizosaccharomyces...    23   7.5  
SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subun...    23   7.5  
SPCC1020.10 |oca2||serine/threonine protein kinase Oca2 |Schizos...    23   9.9  
SPBPB2B2.05 |||GMP synthase [glutamine-hydrolyzing] |Schizosacch...    23   9.9  

>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1854

 Score = 25.0 bits (52), Expect = 1.9
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -3

Query: 122  FIGND*ELILSICYRILIC 66
            ++ N   LILSICY I IC
Sbjct: 1298 YVRNSIFLILSICYTINIC 1316


>SPBC428.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 115

 Score = 23.8 bits (49), Expect = 4.3
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +3

Query: 165 LTLTILLVFSLIIIRK 212
           LTL I+L FSL+I+ K
Sbjct: 65  LTLIIVLYFSLVIVNK 80


>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
           Hip3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1630

 Score = 23.0 bits (47), Expect = 7.5
 Identities = 7/14 (50%), Positives = 12/14 (85%)
 Frame = +2

Query: 224 ILLYLKNFALYISL 265
           IL+YL+ FA+Y+ +
Sbjct: 820 ILIYLRTFAIYVGI 833


>SPBC365.01 |||sec14 cytosolic factor family |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 355

 Score = 23.0 bits (47), Expect = 7.5
 Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
 Frame = +2

Query: 191 FTDYYPKILAGILLYLKNF--ALYISLW 268
           F +YYP+IL   L+    F  AL+  +W
Sbjct: 189 FQNYYPEILGQALIVGSGFRMALFEGVW 216


>SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subunit
           Alg2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 511

 Score = 23.0 bits (47), Expect = 7.5
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +2

Query: 164 INSHYTFSVFTDYYPKI 214
           +NS +T SVF   +PKI
Sbjct: 174 VNSKFTASVFKKAFPKI 190


>SPCC1020.10 |oca2||serine/threonine protein kinase Oca2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 650

 Score = 22.6 bits (46), Expect = 9.9
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +2

Query: 8   DNLIVVEGCFVKTV 49
           DNL+V   CFVK +
Sbjct: 429 DNLVVDSNCFVKII 442


>SPBPB2B2.05 |||GMP synthase [glutamine-hydrolyzing]
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 237

 Score = 22.6 bits (46), Expect = 9.9
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = -3

Query: 98  ILSICYRILICNIYFSKQFLQN 33
           IL IC    + N+YF     QN
Sbjct: 80  ILGICRGCQVLNVYFGGSLYQN 101


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 979,860
Number of Sequences: 5004
Number of extensions: 15102
Number of successful extensions: 30
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 57602552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)