Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_N19
         (271 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016676-8|AAG24105.1|  502|Caenorhabditis elegans Hypothetical ...    27   2.4  
Z93383-9|CAB07630.1|  281|Caenorhabditis elegans Hypothetical pr...    26   4.2  
U40028-10|AAA81121.3|  363|Caenorhabditis elegans Serpentine rec...    25   5.6  
U50300-8|AAC48105.1|  646|Caenorhabditis elegans Hypothetical pr...    25   9.7  
AF000191-3|AAB52882.1|  522|Caenorhabditis elegans Mediator prot...    25   9.7  

>AF016676-8|AAG24105.1|  502|Caenorhabditis elegans Hypothetical
           protein F41B5.9 protein.
          Length = 502

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +1

Query: 19  SCRRLFCKNCLEK*MLQIKIL*HMDKINS*SFPIN 123
           SC++   K CLEK M   K     DKI +   P+N
Sbjct: 88  SCKKCRLKKCLEKGMDASKFQLDRDKITNAIVPVN 122


>Z93383-9|CAB07630.1|  281|Caenorhabditis elegans Hypothetical
           protein F54B8.10 protein.
          Length = 281

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 17/81 (20%), Positives = 30/81 (37%)
 Frame = +2

Query: 17  IVVEGCFVKTV*KNKCYKLKFYSIWTKLIPNHSQ*IXXXXXXXXXRMPDINSHYTFSVFT 196
           IV+    +  V  +  + L FY +W+                      D+  + + ++  
Sbjct: 4   IVITNVLLLIVFASTVFTLNFYLLWSIFYSKRIAFKPDLILIYFRFAADVGYNLSVTIKN 63

Query: 197 DYYPKILAGILLYLKNFALYI 259
            YY   L   L  +KN ALY+
Sbjct: 64  TYYLACLISRLFVVKNLALYL 84


>U40028-10|AAA81121.3|  363|Caenorhabditis elegans Serpentine
           receptor, class e (epsilon)protein 40 protein.
          Length = 363

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = +2

Query: 170 SHYTFSVFTDYYPKILAGILLYLKNFALYISLW 268
           ++  ++++   Y  +L GILL + NF L+  +W
Sbjct: 187 AYSAWNLWLSVYIWLLTGILLLIVNFGLFGYIW 219


>U50300-8|AAC48105.1|  646|Caenorhabditis elegans Hypothetical
           protein R03H4.6 protein.
          Length = 646

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = -3

Query: 83  YRILICNIYFSKQFLQNNLLQL 18
           + +L+  I+F  QFL+N+LL+L
Sbjct: 146 FYLLVPFIFFGLQFLKNDLLRL 167


>AF000191-3|AAB52882.1|  522|Caenorhabditis elegans Mediator protein
           1.2 protein.
          Length = 522

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 3/31 (9%)
 Frame = +2

Query: 185 SVFTDYYPKILAG---ILLYLKNFALYISLW 268
           SV T+ Y K L     I+  L+N A++ISLW
Sbjct: 364 SVITEIYLKHLQDFHEIIAILRNEAMHISLW 394


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,192,541
Number of Sequences: 27780
Number of extensions: 78657
Number of successful extensions: 182
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 12,740,198
effective HSP length: 68
effective length of database: 10,851,158
effective search space used: 227874318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)