Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_N18
         (458 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter ...    28   0.60 
SPBC18H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    26   2.4  
SPCC1682.06 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    26   2.4  
SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase...    26   3.2  
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c...    26   3.2  
SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   4.2  
SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||M...    25   5.6  
SPAC19G12.12 |dlp1||decaprenyl diphosphate synthase subunit 2 Dl...    24   9.7  

>SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter
           Str2 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 597

 Score = 28.3 bits (60), Expect = 0.60
 Identities = 12/34 (35%), Positives = 22/34 (64%)
 Frame = -1

Query: 314 SLGIFLLITICFQVILYSEIVIW*IKNLTNRNNL 213
           +L I LL+T+CF  + Y+   ++ +K+L +R  L
Sbjct: 320 TLSIALLVTLCFYDVKYARYPVFALKSLKDRTIL 353


>SPBC18H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 242

 Score = 26.2 bits (55), Expect = 2.4
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = -1

Query: 410 CVHFCLNYSINGYINS 363
           C+H C +YS+N ++N+
Sbjct: 20  CLHSCPSYSVNNHVNN 35


>SPCC1682.06 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 238

 Score = 26.2 bits (55), Expect = 2.4
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = -1

Query: 410 CVHFCLNYSINGYINS 363
           C+H C +YS+N ++N+
Sbjct: 20  CLHSCPSYSVNNHVNN 35


>SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase
            Gpt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1448

 Score = 25.8 bits (54), Expect = 3.2
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -3

Query: 366  LLDAFKSA*PVAQKRQSFPWNFFTYN 289
            L  +FKS+ P   K+ +F + + TYN
Sbjct: 1196 LSPSFKSSIPAIAKKYNFEYEYITYN 1221


>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1687

 Score = 25.8 bits (54), Expect = 3.2
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -3

Query: 318 SFPWNFFTYNN 286
           +F WNFF YNN
Sbjct: 491 NFDWNFFNYNN 501


>SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr
          1|||Manual
          Length = 217

 Score = 25.4 bits (53), Expect = 4.2
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = +2

Query: 5  EVHTDLRTIFIPSIASRTRDIDRTGLCLS 91
          E H  L+  F PS A   RDI  T  CL+
Sbjct: 9  ECHPFLQRSFFPSFALSHRDIISTRACLN 37


>SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1115

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 6/57 (10%)
 Frame = +2

Query: 68  DRTGLCLSGVRLRLSTRARSVG*NFKKI------ILVYYSYILCKQYRYEINRISSC 220
           +R    LS   LRLS R  ++   +  +      +++ YS  LC ++   I+R S C
Sbjct: 70  ERGVFSLSSKSLRLSNRKGTIRWRYHSVPCVQRSMIILYSCFLCSKHAVLISRDSDC 126


>SPAC19G12.12 |dlp1||decaprenyl diphosphate synthase subunit 2 Dlp1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 294

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = -1

Query: 386 SINGYINSWTHSN 348
           S+NG IN+WT +N
Sbjct: 58  SLNGQINTWTDNN 70


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,803,058
Number of Sequences: 5004
Number of extensions: 34555
Number of successful extensions: 89
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 172312850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)