Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_N18
         (458 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0199 + 1563483-1563572,1563673-1563852,1564091-1564402,156...    28   3.1  
06_03_0551 - 22027441-22028224,22029015-22029344,22029510-220297...    27   5.5  
04_02_0007 + 8464923-8465155,8466037-8466591,8466645-8467662,846...    27   7.3  

>11_01_0199 +
           1563483-1563572,1563673-1563852,1564091-1564402,
           1564753-1564800,1565205-1565438,1565632-1566219
          Length = 483

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = -1

Query: 290 TICFQVILYSEIVIW*IKNLTNRNNLKFG*SHTCIVYIKYNYNK 159
           T  F +I+Y+ IV+W +  LT  +      + T     +Y+YNK
Sbjct: 257 TYSFVLIIYTFIVVWFVGGLTVFHLYLISTNQTTYENFRYHYNK 300


>06_03_0551 -
           22027441-22028224,22029015-22029344,22029510-22029778,
           22030530-22031453,22037761-22038360,22040049-22040267
          Length = 1041

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = -1

Query: 455 LTRLN-LNVHQISRRKCVHFCLNYSINGYINSWT-HSNQHN 339
           LT+L  L V  ISRR C  FC   S + ++ S + H N+ N
Sbjct: 851 LTQLRKLGVSGISRRNCREFCSAISGHAHLESLSVHLNKEN 891


>04_02_0007 +
           8464923-8465155,8466037-8466591,8466645-8467662,
           8467768-8468485,8468651-8468937
          Length = 936

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -1

Query: 389 YSINGYINSWTHSNQHN 339
           + +NG +  W HS QHN
Sbjct: 740 FMVNGSLERWLHSEQHN 756


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,557,208
Number of Sequences: 37544
Number of extensions: 184308
Number of successful extensions: 336
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 332
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 336
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 907440304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)