Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_N18
         (458 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    23   1.2  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    23   1.2  
S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor prot...    21   6.4  
S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor prot...    21   6.4  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       21   6.4  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    21   8.5  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    21   8.5  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    21   8.5  

>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -3

Query: 261 GNCYMVNKKSYKQKQLEIRLISYLYC 184
           G  Y++N K+Y      ++L  YL+C
Sbjct: 28  GFSYLLNCKNYDHPTTLLKLKRYLFC 53


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -1

Query: 413 KCVHFCLNYSINGYINSWTHSNQHN 339
           K +H   NY+ N Y N++ + N +N
Sbjct: 321 KTIHNNNNYNNNNYNNNYNNYNNNN 345


>S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor
           protein.
          Length = 169

 Score = 21.0 bits (42), Expect = 6.4
 Identities = 7/25 (28%), Positives = 15/25 (60%)
 Frame = -1

Query: 425 ISRRKCVHFCLNYSINGYINSWTHS 351
           +S+R C+   +   + G +N+ TH+
Sbjct: 16  MSQRLCIQLVVGPYVIGLMNTMTHT 40


>S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor
           protein.
          Length = 168

 Score = 21.0 bits (42), Expect = 6.4
 Identities = 7/25 (28%), Positives = 15/25 (60%)
 Frame = -1

Query: 425 ISRRKCVHFCLNYSINGYINSWTHS 351
           +S+R C+   +   + G +N+ TH+
Sbjct: 15  MSQRLCIQLVVGPYVIGLMNTMTHT 39


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.0 bits (42), Expect = 6.4
 Identities = 7/23 (30%), Positives = 14/23 (60%)
 Frame = -3

Query: 156 KMIFLKFYPTLRALVDKRSRTPL 88
           +M+ + F P++  +VD  +  PL
Sbjct: 358 RMLDMGFLPSIEKMVDHETMVPL 380


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 20.6 bits (41), Expect = 8.5
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -1

Query: 413 KCVHFCLNYSINGYINSWTHSNQHN 339
           K +H   NY+ N Y N   ++N +N
Sbjct: 88  KTIHNNNNYNNNNYNNYNYNNNNYN 112


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 20.6 bits (41), Expect = 8.5
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = -1

Query: 392 NYSINGYINSWTHSNQHNL 336
           N S+NG     T S QH L
Sbjct: 190 NISLNGIDPELTESEQHRL 208


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 20.6 bits (41), Expect = 8.5
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = -1

Query: 392 NYSINGYINSWTHSNQHNL 336
           N S+NG     T S QH L
Sbjct: 228 NISLNGIDPELTESEQHRL 246


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,838
Number of Sequences: 438
Number of extensions: 2835
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12189771
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)