Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_N17
(449 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo... 36 0.004
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce... 33 0.027
SPAC3A12.05c |taf2||TATA-binding protein associated factor Taf2|... 31 0.082
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po... 31 0.11
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo... 30 0.19
SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase Rdh54... 30 0.19
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p... 29 0.25
SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyc... 29 0.25
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|... 29 0.33
SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|ch... 28 0.76
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo... 27 1.8
SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase Snf21|... 27 1.8
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22... 26 2.3
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe... 26 2.3
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom... 26 2.3
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac... 25 4.1
SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos... 25 4.1
SPAC1002.02 |mug31||nucleoporin Pom34 |Schizosaccharomyces pombe... 25 4.1
SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces po... 25 4.1
SPBC582.10c |||ATP-dependent DNA helicase Rhp16b |Schizosaccharo... 25 4.1
SPBC2G5.01 |||DUF1682 family protein|Schizosaccharomyces pombe|c... 25 5.4
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz... 25 5.4
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo... 25 5.4
SPBC17F3.01c |rga5|SPBC557.01|GTPase activating protein Rga5|Sch... 25 7.1
SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 7.1
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 25 7.1
SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomy... 24 9.4
SPBC1709.06 |dus2||tRNA dihydrouridine synthase Dus2 |Schizosacc... 24 9.4
SPAC30C2.02 |mmd1||deoxyhypusine hydroxylase |Schizosaccharomyce... 24 9.4
SPCC24B10.08c |||histone acetyltransferase complex subunit Ada2 ... 24 9.4
>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
Ino80|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1604
Score = 35.5 bits (78), Expect = 0.004
Identities = 19/61 (31%), Positives = 37/61 (60%), Gaps = 5/61 (8%)
Frame = +2
Query: 278 DPNLIDLTPVEET--LRCKLMPFQYEGVRF--GIARRG-RCMIPDDMGLGKTFQALGIAS 442
+P L++ V++ L CKL +Q +G+ + + +G ++ D+MGLGKT Q++ + +
Sbjct: 823 NPTLVNAFEVKQPKMLMCKLKEYQLKGLNWLANLYEQGINGILADEMGLGKTVQSISVMA 882
Query: 443 Y 445
Y
Sbjct: 883 Y 883
>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1418
Score = 32.7 bits (71), Expect = 0.027
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Frame = +2
Query: 329 LMPFQYEGVRFGIAR---RGRCMIPDDMGLGKTFQALGIAS 442
LMP+Q +G+ + R C++ D+MGLGKT Q + S
Sbjct: 556 LMPYQLKGLNWLYLRWYTHHPCILADEMGLGKTVQVISFIS 596
>SPAC3A12.05c |taf2||TATA-binding protein associated factor
Taf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1174
Score = 31.1 bits (67), Expect = 0.082
Identities = 21/87 (24%), Positives = 39/87 (44%)
Frame = +2
Query: 29 VVSGTIYLISEDRFEVNPSEFCAPLINIFKSILSKSYDSKTKLWNFSVDDYQDLMSNVAT 208
+V I E R ++ + I ++ L +++D T++WN + DL++
Sbjct: 1026 IVEEDITKAVEKRIDITSRASISGAIEALRNDLGQNHDFATEIWNAINNPKSDLLTKRNL 1085
Query: 209 LAPHVVLGNLPLSVLKVLREPTIDPNL 289
L VL S+L L+ P++ P L
Sbjct: 1086 LMICRVLYKAKSSLLVTLKIPSLIPRL 1112
>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 897
Score = 30.7 bits (66), Expect = 0.11
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Frame = +2
Query: 272 TIDPNLIDLTPVEETLRCKLMPFQYEGVRF--GIARRGRC--MIPDDMGLGKTFQALGI 436
TID L + L L+P Q EG + + + +C ++ DDMGLGKT Q + +
Sbjct: 231 TIDLQLKNEQVQSAGLLVSLLPHQVEGHAWMESMEQSSKCGGVMADDMGLGKTIQTIAL 289
>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
Length = 963
Score = 29.9 bits (64), Expect = 0.19
Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 5/41 (12%)
Frame = +2
Query: 329 LMPFQYEGVRFGIARR-----GRCMIPDDMGLGKTFQALGI 436
L+PFQ EGV + + R+ G ++ D+MG+GKT Q + +
Sbjct: 357 LLPFQREGV-YWLKRQEDSSFGGGILADEMGMGKTIQTIAL 396
>SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase
Rdh54|Schizosaccharomyces pombe|chr 1|||Manual
Length = 811
Score = 29.9 bits (64), Expect = 0.19
Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 8/73 (10%)
Frame = +2
Query: 242 LSVLKVLREPTIDPNLIDLTPVEETLRCKLMPFQYEGVRFG----IARRGRC----MIPD 397
L L + R T DP ++ L L Q EGV F + G+C ++ D
Sbjct: 176 LGALVMSRPKTWDPRTHVDVVIDPFLSKHLYSHQREGVSFLYDCLLGMEGKCGYSAILAD 235
Query: 398 DMGLGKTFQALGI 436
+MGLGKT Q + +
Sbjct: 236 EMGLGKTLQTITV 248
>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1040
Score = 29.5 bits (63), Expect = 0.25
Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
Frame = +2
Query: 278 DPNLIDLTPVEETLRCKLMPFQYEGV----RFGIARRGRCMIPDDMGLGKTFQALGI 436
DP + + TP L LM Q EG+ R + + ++ DDMGLGKT QAL +
Sbjct: 375 DPTIREGTPAG--LIPTLMEHQKEGLMWLKRLEESSKKGGILADDMGLGKTVQALAL 429
>SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 852
Score = 29.5 bits (63), Expect = 0.25
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 8/44 (18%)
Frame = +2
Query: 329 LMPFQYEGVRF------GIARR--GRCMIPDDMGLGKTFQALGI 436
L P Q EGV+F G R C++ D+MGLGKT Q + +
Sbjct: 264 LRPHQIEGVKFLYKCVTGRIDRCANGCIMADEMGLGKTLQCIAL 307
>SPBC1826.01c |mot1||TATA-binding protein associated factor
Mot1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1953
Score = 29.1 bits (62), Expect = 0.33
Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Frame = +2
Query: 266 EPTIDPNLIDLTPVEETLRCKLMPFQYEGVRFGIARRGRC----MIPDDMGLGKTFQALG 433
E ++P+ ++ + + L +Q EGV + +A + ++ DDMGLGKT Q +
Sbjct: 1337 EQMLNPSKVEAFSIPVPISADLRKYQQEGVNW-LAFLNKYELHGILCDDMGLGKTLQTIC 1395
Query: 434 IAS 442
I +
Sbjct: 1396 IVA 1398
>SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 867
Score = 27.9 bits (59), Expect = 0.76
Identities = 14/31 (45%), Positives = 23/31 (74%), Gaps = 3/31 (9%)
Frame = -3
Query: 336 GISLQRNVSSTGVK---SIKLGSIVGSLNTF 253
G++L + VSS+G+ ++K+G+ V SLNTF
Sbjct: 723 GVALGKVVSSSGLLELIALKIGNAVSSLNTF 753
>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1388
Score = 26.6 bits (56), Expect = 1.8
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +2
Query: 386 MIPDDMGLGKTFQALGIASY 445
++ D+MGLGKT Q + SY
Sbjct: 397 ILADEMGLGKTVQTVAFLSY 416
>SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase
Snf21|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1199
Score = 26.6 bits (56), Expect = 1.8
Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Frame = +2
Query: 326 KLMPFQYEGVRFGIARRGRCM---IPDDMGLGKTFQALGIASY 445
KL +Q G+++ I+ + + D+MGLGKT Q + + ++
Sbjct: 416 KLKEYQLRGLQWMISLYNNHLNGILADEMGLGKTIQTISLITH 458
>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
Snf22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1680
Score = 26.2 bits (55), Expect = 2.3
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +2
Query: 386 MIPDDMGLGKTFQALGIASY 445
++ D+MGLGKT Q + +Y
Sbjct: 891 ILADEMGLGKTIQTIAFITY 910
>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 972
Score = 26.2 bits (55), Expect = 2.3
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = +2
Query: 41 TIYLISEDRFEVNPSEFCAPLIN-IFKSILSKSYDSKTKLWN 163
++YLI + E P +N I K IL K YDS +WN
Sbjct: 592 SVYLIYLKQMETKNLSEEKPQVNKIVKKILKK-YDSSVSVWN 632
>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1375
Score = 26.2 bits (55), Expect = 2.3
Identities = 8/21 (38%), Positives = 16/21 (76%)
Frame = +2
Query: 386 MIPDDMGLGKTFQALGIASYY 448
++ D+MG+GKT + LG+ ++
Sbjct: 287 ILADEMGMGKTLEVLGLVLHH 307
>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1373
Score = 25.4 bits (53), Expect = 4.1
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +2
Query: 386 MIPDDMGLGKTFQALGIASY 445
++ D+MGLGKT Q + SY
Sbjct: 412 ILADEMGLGKTVQTVCFLSY 431
>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
Pof11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 506
Score = 25.4 bits (53), Expect = 4.1
Identities = 8/28 (28%), Positives = 16/28 (57%)
Frame = +2
Query: 116 KSILSKSYDSKTKLWNFSVDDYQDLMSN 199
+ I+S YD ++WNF+ + ++ N
Sbjct: 440 EKIVSGGYDGTVRIWNFNTGEQHCVLHN 467
>SPAC1002.02 |mug31||nucleoporin Pom34 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 229
Score = 25.4 bits (53), Expect = 4.1
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = -3
Query: 417 VLPSPMSSGIIHRPRRAIPNLTPS 346
VLP+ + +H+P+ PN+ PS
Sbjct: 40 VLPTDPKASSLHKPQEQQPNIIPS 63
>SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 949
Score = 25.4 bits (53), Expect = 4.1
Identities = 18/57 (31%), Positives = 27/57 (47%)
Frame = +2
Query: 74 VNPSEFCAPLINIFKSILSKSYDSKTKLWNFSVDDYQDLMSNVATLAPHVVLGNLPL 244
V SE C ++ K L S T L ++DDY L+++ + LAP G L +
Sbjct: 693 VKVSEDCTATVSFGKQSLHIVRSSVTLLE--TLDDYGKLLAHFSRLAPEFQTGMLDM 747
>SPBC582.10c |||ATP-dependent DNA helicase Rhp16b
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 830
Score = 25.4 bits (53), Expect = 4.1
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +2
Query: 386 MIPDDMGLGKTFQALGI 436
++ DDMGLGKT Q + +
Sbjct: 259 ILADDMGLGKTIQMIAL 275
>SPBC2G5.01 |||DUF1682 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 374
Score = 25.0 bits (52), Expect = 5.4
Identities = 20/76 (26%), Positives = 32/76 (42%)
Frame = +2
Query: 113 FKSILSKSYDSKTKLWNFSVDDYQDLMSNVATLAPHVVLGNLPLSVLKVLREPTIDPNLI 292
F S L+ + K + QDL++ ++LGN+ SVL P D
Sbjct: 112 FSSYLTGRLNVKNVYTTLQLFPRQDLLAYSLNQIVEILLGNVMSSVL-----PVADRFQF 166
Query: 293 DLTPVEETLRCKLMPF 340
DLT ++ L+ + F
Sbjct: 167 DLTLADQNLKAERFVF 182
>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
Chs2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 926
Score = 25.0 bits (52), Expect = 5.4
Identities = 12/46 (26%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Frame = -2
Query: 433 SESLKRFTQSH-VIWYHTSSATCYTKPDPFVLKWHQLTAQCFFYWS 299
+ SLK F+ S+ YH CY KP + + + + W+
Sbjct: 812 NSSLKNFSSSNDTSVYHDVQDHCYRKPQSYEDHYQDIRTRYVLVWA 857
>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
Swr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1288
Score = 25.0 bits (52), Expect = 5.4
Identities = 8/20 (40%), Positives = 15/20 (75%)
Frame = +2
Query: 386 MIPDDMGLGKTFQALGIASY 445
++ D+MGLGKT Q + + ++
Sbjct: 469 ILADEMGLGKTIQTIALLAH 488
>SPBC17F3.01c |rga5|SPBC557.01|GTPase activating protein
Rga5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 361
Score = 24.6 bits (51), Expect = 7.1
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = +2
Query: 164 FSVDDYQDLMSNVATLAPHVVLGNLPLSVLKVLREPTIDPNLIDLTPVE 310
++V D ++ L P V+ PL + REP PNL D VE
Sbjct: 120 YTVHDAANVFRRFINLMPEHVI---PLEYYERFREPMTIPNLTDNERVE 165
>SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 412
Score = 24.6 bits (51), Expect = 7.1
Identities = 13/46 (28%), Positives = 22/46 (47%)
Frame = +2
Query: 71 EVNPSEFCAPLINIFKSILSKSYDSKTKLWNFSVDDYQDLMSNVAT 208
+VN ++C L + S + S LWNFS + + + S A+
Sbjct: 107 DVNRGDYCFLLSTPVECSASTNSHSYDCLWNFSCNSFPEYSSYSAS 152
>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1610
Score = 24.6 bits (51), Expect = 7.1
Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
Frame = +2
Query: 71 EVNPSEFCAPLINIFKSILSKSYD-----SKTKLWNFSVDDYQDLMSNVATLAPHV 223
+++ + PL+N IL+ SYD K ++++ DY + LA H+
Sbjct: 1349 QLHAMDLLRPLLNTLVEILNLSYDRPINVDKYPKIDYNLMDYSSATDRIRCLAIHI 1404
>SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 24.2 bits (50), Expect = 9.4
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +2
Query: 386 MIPDDMGLGKTFQALGIAS 442
+I D+MGLGKT Q + S
Sbjct: 299 IIGDEMGLGKTIQIVSFLS 317
>SPBC1709.06 |dus2||tRNA dihydrouridine synthase Dus2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 479
Score = 24.2 bits (50), Expect = 9.4
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 7/53 (13%)
Frame = +2
Query: 194 SNVATLAPHVVLGNLPLSVLK-------VLREPTIDPNLIDLTPVEETLRCKL 331
SN LAP V +G LP+ +L V +D L+ TPVE + ++
Sbjct: 7 SNKVCLAPMVRIGELPMRLLALRYGANLVWGPEIVDKALLSGTPVERVVNDRI 59
>SPAC30C2.02 |mmd1||deoxyhypusine hydroxylase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 318
Score = 24.2 bits (50), Expect = 9.4
Identities = 16/43 (37%), Positives = 19/43 (44%)
Frame = +2
Query: 116 KSILSKSYDSKTKLWNFSVDDYQDLMSNVATLAPHVVLGNLPL 244
+ I YDS D QD+ S VA L +V NLPL
Sbjct: 150 EKITPSMYDSVVDPAPPMPDHEQDVKSEVAKLRSEIVDQNLPL 192
>SPCC24B10.08c |||histone acetyltransferase complex subunit Ada2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 437
Score = 24.2 bits (50), Expect = 9.4
Identities = 10/33 (30%), Positives = 21/33 (63%)
Frame = +2
Query: 101 LINIFKSILSKSYDSKTKLWNFSVDDYQDLMSN 199
++NI+ S L++ K ++N ++ DY+ L +N
Sbjct: 208 MLNIYNSRLTRRAVRKQTIFNHNLLDYRRLQAN 240
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,774,606
Number of Sequences: 5004
Number of extensions: 34017
Number of successful extensions: 131
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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