Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_N17
(449 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC043341-1|AAH43341.1| 954|Homo sapiens SWI/SNF related, matrix... 97 3e-20
AL122076-1|CAB59251.1| 808|Homo sapiens hypothetical protein pr... 97 3e-20
AF432223-1|AAL73034.1| 954|Homo sapiens SMARCAL1 protein. 97 3e-20
AF210842-1|AAF70454.1| 954|Homo sapiens HARP protein. 97 3e-20
AC098820-1|AAX93097.1| 954|Homo sapiens unknown protein. 97 3e-20
BC016482-1|AAH16482.1| 954|Homo sapiens SWI/SNF related, matrix... 96 6e-20
AF082179-1|AAF24984.1| 954|Homo sapiens HepA-related protein HA... 95 7e-20
AK000117-1|BAA90955.1| 619|Homo sapiens protein ( Homo sapiens ... 89 9e-18
BC089429-1|AAH89429.2| 1079|Homo sapiens zinc finger, RAN-bindin... 70 4e-12
AL161454-5|CAI16517.1| 712|Homo sapiens chromosome 9 open readi... 34 0.26
AB046784-1|BAB13390.3| 2432|Homo sapiens KIAA1564 protein protein. 34 0.26
BC001965-1|AAH01965.1| 910|Homo sapiens RAD54 homolog B (S. cer... 33 0.34
AF112481-1|AAD34331.1| 910|Homo sapiens RAD54B protein protein. 33 0.34
AY034072-1|AAK56405.1| 2713|Homo sapiens chromodomain helicase D... 32 0.79
AL121674-2|CAI21744.1| 2715|Homo sapiens chromodomain helicase D... 32 0.79
AL031669-3|CAI22255.1| 2715|Homo sapiens chromodomain helicase D... 32 0.79
AL031667-8|CAI42983.1| 524|Homo sapiens chromodomain helicase D... 32 0.79
AL031667-2|CAI42977.1| 2715|Homo sapiens chromodomain helicase D... 32 0.79
AK000368-1|BAA91116.1| 251|Homo sapiens protein ( Homo sapiens ... 32 0.79
AF525085-1|AAN59903.1| 488|Homo sapiens RIGB protein. 32 0.79
AB037837-1|BAA92654.1| 1967|Homo sapiens KIAA1416 protein protein. 32 0.79
DQ333316-1|ABD24032.1| 2881|Homo sapiens PRIC320 isoform 1 protein. 32 1.0
AY647157-1|AAT66509.1| 2881|Homo sapiens KISH2 protein. 32 1.0
AY243500-1|AAQ24287.1| 2897|Homo sapiens chromatin remodeling fa... 32 1.0
AL035406-11|CAI19894.1| 1195|Homo sapiens chromodomain helicase ... 32 1.0
AL035406-9|CAI19891.1| 1954|Homo sapiens chromodomain helicase D... 32 1.0
AL031847-11|CAI19451.1| 1195|Homo sapiens chromodomain helicase ... 32 1.0
AL031847-10|CAI19450.1| 1954|Homo sapiens chromodomain helicase ... 32 1.0
AK127046-1|BAC86802.1| 1225|Homo sapiens protein ( Homo sapiens ... 32 1.0
AF425231-1|AAL98962.1| 1954|Homo sapiens chromodomain helicase D... 32 1.0
AB002306-1|BAA20767.3| 2759|Homo sapiens KIAA0308 protein. 32 1.0
X86691-1|CAA60384.1| 1912|Homo sapiens Mi-2 protein protein. 31 1.4
BC038596-1|AAH38596.1| 1937|Homo sapiens CHD4 protein protein. 31 1.4
EF560738-1|ABQ59048.1| 900|Homo sapiens CHD1L protein protein. 31 1.8
BC043501-1|AAH43501.1| 890|Homo sapiens Similar to RIKEN cDNA 4... 31 1.8
BC005038-1|AAH05038.1| 789|Homo sapiens CHD1L protein protein. 31 1.8
BC001171-1|AAH01171.1| 896|Homo sapiens Unknown (protein for IM... 31 1.8
AL356378-7|CAH72650.1| 897|Homo sapiens chromodomain helicase D... 31 1.8
AK001342-1|BAA91637.1| 831|Homo sapiens protein ( Homo sapiens ... 31 1.8
AF537213-1|AAO49505.1| 897|Homo sapiens ALC1 protein. 31 1.8
AK128030-1|BAC87237.1| 2427|Homo sapiens protein ( Homo sapiens ... 30 3.2
AF143946-1|AAD39760.1| 2971|Homo sapiens transcriptional activat... 30 3.2
AB002307-1|BAA20768.2| 3053|Homo sapiens KIAA0309 protein. 30 3.2
EU069463-1|ABU25227.1| 1250|Homo sapiens Plk1-interacting checkp... 30 4.2
BC117134-1|AAI17135.1| 1709|Homo sapiens chromodomain helicase D... 30 4.2
BC111486-1|AAI11487.1| 1250|Homo sapiens excision repair cross-c... 30 4.2
BC068595-1|AAH68595.1| 498|Homo sapiens beta 1,3-galactosyltran... 30 4.2
AY190526-1|AAO37647.1| 498|Homo sapiens beta3-glycosyltransfera... 30 4.2
AL138965-2|CAH73049.2| 498|Homo sapiens beta 1,3-galactosyltran... 30 4.2
AL137142-6|CAI12432.2| 498|Homo sapiens beta 1,3-galactosyltran... 30 4.2
AF006513-1|AAB87381.1| 1709|Homo sapiens CHD1 protein. 30 4.2
AB101481-1|BAD13528.1| 498|Homo sapiens glucosyltransferase pro... 30 4.2
AY481573-1|AAS47698.1| 5202|Homo sapiens Usher syndrome 2A isofo... 29 5.5
AL513305-1|CAH73621.1| 5202|Homo sapiens Usher syndrome 2A (auto... 29 5.5
AL445650-4|CAH70621.1| 5202|Homo sapiens Usher syndrome 2A (auto... 29 5.5
AL358858-2|CAH71588.1| 5202|Homo sapiens Usher syndrome 2A (auto... 29 5.5
AL358452-1|CAI19189.1| 5202|Homo sapiens Usher syndrome 2A (auto... 29 5.5
AL139259-1|CAI23041.1| 5202|Homo sapiens Usher syndrome 2A (auto... 29 5.5
AF006514-1|AAB87382.1| 1739|Homo sapiens CHD2 protein. 29 5.5
X97795-1|CAA66379.1| 747|Homo sapiens RAD54 protein. 29 7.3
BC121060-1|AAI21061.1| 747|Homo sapiens RAD54-like (S. cerevisi... 29 7.3
BC121059-1|AAI21060.1| 747|Homo sapiens RAD54-like (S. cerevisi... 29 7.3
AY623117-1|AAT38113.1| 747|Homo sapiens RAD54-like (S. cerevisi... 29 7.3
AL121602-1|CAI22117.1| 747|Homo sapiens RAD54-like (S. cerevisi... 29 7.3
AK091315-1|BAC03635.1| 125|Homo sapiens protein ( Homo sapiens ... 29 9.7
>BC043341-1|AAH43341.1| 954|Homo sapiens SWI/SNF related, matrix
associated, actin dependent regulator of chromatin, sub
protein.
Length = 954
Score = 96.7 bits (230), Expect = 3e-20
Identities = 61/154 (39%), Positives = 89/154 (57%), Gaps = 8/154 (5%)
Frame = +2
Query: 11 SVPVTKVVSGTIYLISEDRFEVNPSEFCAPLINIFKSILSKSYDSKTKLWNFSVDDYQDL 190
S P V G LIS FE + S + LI +FK + S+ YD KT+ W+F ++++ L
Sbjct: 324 SAPSLSFVKGRCMLISRAYFEADIS-YSQDLIALFKQMDSRRYDVKTRKWSFLLEEHSKL 382
Query: 191 MSNVATLAPHVVLGNLP----LSVLKVLREPTID--PNL--IDLTPVEETLRCKLMPFQY 346
++ V L P V L LP L+ L++ ++ P++ DL+ V+ L LMPFQ
Sbjct: 383 IAKVRCL-PQVQLDPLPTTLTLAFASQLKKTSLSLTPDVPEADLSEVDPKLVSNLMPFQR 441
Query: 347 EGVRFGIARRGRCMIPDDMGLGKTFQALGIASYY 448
GV F IA+ GR ++ DDMGLGKT QA+ IA++Y
Sbjct: 442 AGVNFAIAKGGRLLLADDMGLGKTIQAICIAAFY 475
Score = 48.4 bits (110), Expect = 1e-05
Identities = 24/50 (48%), Positives = 33/50 (66%)
Frame = +2
Query: 62 DRFEVNPSEFCAPLINIFKSILSKSYDSKTKLWNFSVDDYQDLMSNVATL 211
DRF+V + A LI +FK++ SK+YD TK WNFS++DY LM +L
Sbjct: 246 DRFQVLIG-YNAELIAVFKTLPSKNYDPDTKTWNFSMNDYSALMKAAQSL 294
>AL122076-1|CAB59251.1| 808|Homo sapiens hypothetical protein
protein.
Length = 808
Score = 96.7 bits (230), Expect = 3e-20
Identities = 61/154 (39%), Positives = 89/154 (57%), Gaps = 8/154 (5%)
Frame = +2
Query: 11 SVPVTKVVSGTIYLISEDRFEVNPSEFCAPLINIFKSILSKSYDSKTKLWNFSVDDYQDL 190
S P V G LIS FE + S + LI +FK + S+ YD KT+ W+F ++++ L
Sbjct: 178 SAPSLSFVKGRCMLISRAYFEADIS-YSQDLIALFKQMDSRRYDVKTRKWSFLLEEHSKL 236
Query: 191 MSNVATLAPHVVLGNLP----LSVLKVLREPTID--PNL--IDLTPVEETLRCKLMPFQY 346
++ V L P V L LP L+ L++ ++ P++ DL+ V+ L LMPFQ
Sbjct: 237 IAKVRCL-PQVQLDPLPTTLTLAFASQLKKTSLSLTPDVPEADLSEVDPKLVSNLMPFQR 295
Query: 347 EGVRFGIARRGRCMIPDDMGLGKTFQALGIASYY 448
GV F IA+ GR ++ DDMGLGKT QA+ IA++Y
Sbjct: 296 AGVNFAIAKGGRLLLADDMGLGKTIQAICIAAFY 329
Score = 48.4 bits (110), Expect = 1e-05
Identities = 24/50 (48%), Positives = 33/50 (66%)
Frame = +2
Query: 62 DRFEVNPSEFCAPLINIFKSILSKSYDSKTKLWNFSVDDYQDLMSNVATL 211
DRF+V + A LI +FK++ SK+YD TK WNFS++DY LM +L
Sbjct: 100 DRFQVLIG-YNAELIAVFKTLPSKNYDPDTKTWNFSMNDYSALMKAAQSL 148
>AF432223-1|AAL73034.1| 954|Homo sapiens SMARCAL1 protein.
Length = 954
Score = 96.7 bits (230), Expect = 3e-20
Identities = 61/154 (39%), Positives = 89/154 (57%), Gaps = 8/154 (5%)
Frame = +2
Query: 11 SVPVTKVVSGTIYLISEDRFEVNPSEFCAPLINIFKSILSKSYDSKTKLWNFSVDDYQDL 190
S P V G LIS FE + S + LI +FK + S+ YD KT+ W+F ++++ L
Sbjct: 324 SAPSLSFVKGRCMLISRAYFEADIS-YSQDLIALFKQMDSRRYDVKTRKWSFLLEEHSKL 382
Query: 191 MSNVATLAPHVVLGNLP----LSVLKVLREPTID--PNL--IDLTPVEETLRCKLMPFQY 346
++ V L P V L LP L+ L++ ++ P++ DL+ V+ L LMPFQ
Sbjct: 383 IAKVRCL-PQVQLDPLPTTLTLAFASQLKKTSLSLTPDVPEADLSEVDPKLVSNLMPFQR 441
Query: 347 EGVRFGIARRGRCMIPDDMGLGKTFQALGIASYY 448
GV F IA+ GR ++ DDMGLGKT QA+ IA++Y
Sbjct: 442 AGVNFAIAKGGRLLLADDMGLGKTIQAICIAAFY 475
Score = 48.4 bits (110), Expect = 1e-05
Identities = 24/50 (48%), Positives = 33/50 (66%)
Frame = +2
Query: 62 DRFEVNPSEFCAPLINIFKSILSKSYDSKTKLWNFSVDDYQDLMSNVATL 211
DRF+V + A LI +FK++ SK+YD TK WNFS++DY LM +L
Sbjct: 246 DRFQVLIG-YNAELIAVFKTLPSKNYDPDTKTWNFSMNDYSALMKAAQSL 294
>AF210842-1|AAF70454.1| 954|Homo sapiens HARP protein.
Length = 954
Score = 96.7 bits (230), Expect = 3e-20
Identities = 61/154 (39%), Positives = 89/154 (57%), Gaps = 8/154 (5%)
Frame = +2
Query: 11 SVPVTKVVSGTIYLISEDRFEVNPSEFCAPLINIFKSILSKSYDSKTKLWNFSVDDYQDL 190
S P V G LIS FE + S + LI +FK + S+ YD KT+ W+F ++++ L
Sbjct: 324 SAPSLSFVKGRCMLISRAYFEADIS-YSQDLIALFKQMDSRRYDVKTRKWSFLLEEHSKL 382
Query: 191 MSNVATLAPHVVLGNLP----LSVLKVLREPTID--PNL--IDLTPVEETLRCKLMPFQY 346
++ V L P V L LP L+ L++ ++ P++ DL+ V+ L LMPFQ
Sbjct: 383 IAKVRCL-PQVQLDPLPTTLTLAFASQLKKTSLSLTPDVPEADLSEVDPKLVSNLMPFQR 441
Query: 347 EGVRFGIARRGRCMIPDDMGLGKTFQALGIASYY 448
GV F IA+ GR ++ DDMGLGKT QA+ IA++Y
Sbjct: 442 AGVNFAIAKGGRLLLADDMGLGKTIQAICIAAFY 475
Score = 48.4 bits (110), Expect = 1e-05
Identities = 24/50 (48%), Positives = 33/50 (66%)
Frame = +2
Query: 62 DRFEVNPSEFCAPLINIFKSILSKSYDSKTKLWNFSVDDYQDLMSNVATL 211
DRF+V + A LI +FK++ SK+YD TK WNFS++DY LM +L
Sbjct: 246 DRFQVLIG-YNAELIAVFKTLPSKNYDPDTKTWNFSMNDYSALMKAAQSL 294
>AC098820-1|AAX93097.1| 954|Homo sapiens unknown protein.
Length = 954
Score = 96.7 bits (230), Expect = 3e-20
Identities = 61/154 (39%), Positives = 89/154 (57%), Gaps = 8/154 (5%)
Frame = +2
Query: 11 SVPVTKVVSGTIYLISEDRFEVNPSEFCAPLINIFKSILSKSYDSKTKLWNFSVDDYQDL 190
S P V G LIS FE + S + LI +FK + S+ YD KT+ W+F ++++ L
Sbjct: 324 SAPSLSFVKGRCMLISRAYFEADIS-YSQDLIALFKQMDSRRYDVKTRKWSFLLEEHSKL 382
Query: 191 MSNVATLAPHVVLGNLP----LSVLKVLREPTID--PNL--IDLTPVEETLRCKLMPFQY 346
++ V L P V L LP L+ L++ ++ P++ DL+ V+ L LMPFQ
Sbjct: 383 IAKVRCL-PQVQLDPLPTTLTLAFASQLKKTSLSLTPDVPEADLSEVDPKLVSNLMPFQR 441
Query: 347 EGVRFGIARRGRCMIPDDMGLGKTFQALGIASYY 448
GV F IA+ GR ++ DDMGLGKT QA+ IA++Y
Sbjct: 442 AGVNFAIAKGGRLLLADDMGLGKTIQAICIAAFY 475
Score = 48.4 bits (110), Expect = 1e-05
Identities = 24/50 (48%), Positives = 33/50 (66%)
Frame = +2
Query: 62 DRFEVNPSEFCAPLINIFKSILSKSYDSKTKLWNFSVDDYQDLMSNVATL 211
DRF+V + A LI +FK++ SK+YD TK WNFS++DY LM +L
Sbjct: 246 DRFQVLIG-YNAELIAVFKTLPSKNYDPDTKTWNFSMNDYSALMKAAQSL 294
>BC016482-1|AAH16482.1| 954|Homo sapiens SWI/SNF related, matrix
associated, actin dependent regulator of chromatin, sub
protein.
Length = 954
Score = 95.9 bits (228), Expect = 6e-20
Identities = 61/154 (39%), Positives = 88/154 (57%), Gaps = 8/154 (5%)
Frame = +2
Query: 11 SVPVTKVVSGTIYLISEDRFEVNPSEFCAPLINIFKSILSKSYDSKTKLWNFSVDDYQDL 190
S P V G LIS FE + S + LI +FK + S+ YD KT+ W+F + ++ L
Sbjct: 324 SAPSLSFVKGRCMLISRAYFEADIS-YSQDLIALFKQMDSRRYDVKTRKWSFLLQEHSKL 382
Query: 191 MSNVATLAPHVVLGNLP----LSVLKVLREPTID--PNL--IDLTPVEETLRCKLMPFQY 346
++ V L P V L LP L+ L++ ++ P++ DL+ V+ L LMPFQ
Sbjct: 383 IAKVRCL-PQVQLDPLPTTLTLAFASQLKKTSLSLTPDVPEADLSEVDPKLVSNLMPFQR 441
Query: 347 EGVRFGIARRGRCMIPDDMGLGKTFQALGIASYY 448
GV F IA+ GR ++ DDMGLGKT QA+ IA++Y
Sbjct: 442 AGVNFAIAKGGRLLLADDMGLGKTIQAICIAAFY 475
Score = 48.4 bits (110), Expect = 1e-05
Identities = 24/50 (48%), Positives = 33/50 (66%)
Frame = +2
Query: 62 DRFEVNPSEFCAPLINIFKSILSKSYDSKTKLWNFSVDDYQDLMSNVATL 211
DRF+V + A LI +FK++ SK+YD TK WNFS++DY LM +L
Sbjct: 246 DRFQVLIG-YNAELIAVFKTLPSKNYDPDTKTWNFSMNDYSALMKAAQSL 294
>AF082179-1|AAF24984.1| 954|Homo sapiens HepA-related protein HARP
protein.
Length = 954
Score = 95.5 bits (227), Expect = 7e-20
Identities = 61/154 (39%), Positives = 89/154 (57%), Gaps = 8/154 (5%)
Frame = +2
Query: 11 SVPVTKVVSGTIYLISEDRFEVNPSEFCAPLINIFKSILSKSYDSKTKLWNFSVDDYQDL 190
S P V G LIS FE + S + LI +FK + S+ YD KT+ W+F ++++ L
Sbjct: 324 SAPSLSFVKGRGMLISRAYFEADIS-YSQDLIALFKQMDSRRYDVKTRKWSFLLEEHSKL 382
Query: 191 MSNVATLAPHVVLGNLP----LSVLKVLREPTID--PNL--IDLTPVEETLRCKLMPFQY 346
++ V L P V L LP L+ L++ ++ P++ DL+ V+ L LMPFQ
Sbjct: 383 IAKVRCL-PQVQLDPLPTTLTLAFASQLKKTSLSLTPDVPEADLSEVDPKLVSNLMPFQR 441
Query: 347 EGVRFGIARRGRCMIPDDMGLGKTFQALGIASYY 448
GV F IA+ GR ++ DDMGLGKT QA+ IA++Y
Sbjct: 442 AGVNFAIAKGGRLLLADDMGLGKTIQAICIAAFY 475
Score = 48.4 bits (110), Expect = 1e-05
Identities = 24/50 (48%), Positives = 33/50 (66%)
Frame = +2
Query: 62 DRFEVNPSEFCAPLINIFKSILSKSYDSKTKLWNFSVDDYQDLMSNVATL 211
DRF+V + A LI +FK++ SK+YD TK WNFS++DY LM +L
Sbjct: 246 DRFQVLIG-YNAELIAVFKTLPSKNYDPDTKTWNFSMNDYSALMKAAQSL 294
>AK000117-1|BAA90955.1| 619|Homo sapiens protein ( Homo sapiens
cDNA FLJ20110 fis, clone COL05103. ).
Length = 619
Score = 88.6 bits (210), Expect = 9e-18
Identities = 56/141 (39%), Positives = 84/141 (59%), Gaps = 8/141 (5%)
Frame = +2
Query: 50 LISEDRFEVNPSEFCAPLINIFKSILSKSYDSKTKLWNFSVDDYQDLMSNVATLAPHVVL 229
LIS F+ + S + LI +FK + S+ YD KT+ W+F + ++ L++ V L P V L
Sbjct: 2 LISRAYFKADIS-YSQDLIALFKQMDSRRYDVKTRKWSFLLQEHSKLIAKVRCL-PQVQL 59
Query: 230 GNLP----LSVLKVLREPTID--PNL--IDLTPVEETLRCKLMPFQYEGVRFGIARRGRC 385
LP L+ L++ ++ P++ DL+ V+ L LMPFQ GV F IA+ GR
Sbjct: 60 DPLPTTLTLAFASQLKKTSLSLTPDVPEADLSEVDPKLVSNLMPFQRAGVNFAIAKGGRL 119
Query: 386 MIPDDMGLGKTFQALGIASYY 448
++ DDMGLGKT QA+ IA++Y
Sbjct: 120 LLADDMGLGKTIQAICIAAFY 140
>BC089429-1|AAH89429.2| 1079|Homo sapiens zinc finger, RAN-binding
domain containing 3 protein.
Length = 1079
Score = 69.7 bits (163), Expect = 4e-12
Identities = 30/55 (54%), Positives = 40/55 (72%)
Frame = +2
Query: 284 NLIDLTPVEETLRCKLMPFQYEGVRFGIARRGRCMIPDDMGLGKTFQALGIASYY 448
NL+D P + LR KL+PFQ +G+ F + R GRCM+ D+MGLGKT QA+GI +Y
Sbjct: 24 NLLDFLP--DRLRAKLLPFQKDGIIFALKRNGRCMVADEMGLGKTIQAIGITYFY 76
>AL161454-5|CAI16517.1| 712|Homo sapiens chromosome 9 open reading
frame 102 protein.
Length = 712
Score = 33.9 bits (74), Expect = 0.26
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Frame = +2
Query: 314 TLRCKLMPFQYEGVRF---GIARRGRCMIPDDMGLGKTFQAL 430
T+ L +Q EG RF G C++ DDMGLGKT Q +
Sbjct: 129 TINRYLRDYQREGTRFLYGHYIHGGGCILGDDMGLGKTVQVI 170
>AB046784-1|BAB13390.3| 2432|Homo sapiens KIAA1564 protein protein.
Length = 2432
Score = 33.9 bits (74), Expect = 0.26
Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Frame = +2
Query: 320 RCKLMPFQYEGVR---FGIARRGRCMIPDDMGLGKTFQAL 430
R +L +Q EGV F R C++ D+MGLGKT Q++
Sbjct: 659 RNQLREYQLEGVNWLLFNWYNRQNCILADEMGLGKTIQSI 698
>BC001965-1|AAH01965.1| 910|Homo sapiens RAD54 homolog B (S.
cerevisiae) protein.
Length = 910
Score = 33.5 bits (73), Expect = 0.34
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 8/58 (13%)
Frame = +2
Query: 287 LIDLTPVEETLRCKLMPFQYEGVRF------GIARRGRC--MIPDDMGLGKTFQALGI 436
L+D+ ++ L L P Q EG+ F G+ GRC ++ D+MGLGKT Q + +
Sbjct: 283 LVDVV-IDPYLVYHLRPHQKEGIIFLYECVMGMRMNGRCGAILADEMGLGKTLQCISL 339
>AF112481-1|AAD34331.1| 910|Homo sapiens RAD54B protein protein.
Length = 910
Score = 33.5 bits (73), Expect = 0.34
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 8/58 (13%)
Frame = +2
Query: 287 LIDLTPVEETLRCKLMPFQYEGVRF------GIARRGRC--MIPDDMGLGKTFQALGI 436
L+D+ ++ L L P Q EG+ F G+ GRC ++ D+MGLGKT Q + +
Sbjct: 283 LVDVV-IDPYLVYHLRPHQKEGIIFLYECVMGMRMNGRCGAILADEMGLGKTLQCISL 339
>AY034072-1|AAK56405.1| 2713|Homo sapiens chromodomain helicase DNA
binding protein 5 protein.
Length = 2713
Score = 32.3 bits (70), Expect = 0.79
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Frame = +2
Query: 326 KLMPFQYEGVR---FGIARRGRCMIPDDMGLGKTFQALGIAS 442
+L +Q EG+ F R C++ D+MGLGKT Q++ S
Sbjct: 458 QLREYQLEGMNWLLFNWYNRKNCILADEMGLGKTIQSITFLS 499
>AL121674-2|CAI21744.1| 2715|Homo sapiens chromodomain helicase DNA
binding protein 6 protein.
Length = 2715
Score = 32.3 bits (70), Expect = 0.79
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Frame = +2
Query: 326 KLMPFQYEGVR---FGIARRGRCMIPDDMGLGKTFQALGIAS 442
+L +Q EG+ F R C++ D+MGLGKT Q++ S
Sbjct: 460 QLREYQLEGMNWLLFNWYNRKNCILADEMGLGKTIQSITFLS 501
>AL031669-3|CAI22255.1| 2715|Homo sapiens chromodomain helicase DNA
binding protein 6 protein.
Length = 2715
Score = 32.3 bits (70), Expect = 0.79
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Frame = +2
Query: 326 KLMPFQYEGVR---FGIARRGRCMIPDDMGLGKTFQALGIAS 442
+L +Q EG+ F R C++ D+MGLGKT Q++ S
Sbjct: 460 QLREYQLEGMNWLLFNWYNRKNCILADEMGLGKTIQSITFLS 501
>AL031667-8|CAI42983.1| 524|Homo sapiens chromodomain helicase DNA
binding protein 6 protein.
Length = 524
Score = 32.3 bits (70), Expect = 0.79
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Frame = +2
Query: 326 KLMPFQYEGVR---FGIARRGRCMIPDDMGLGKTFQALGIAS 442
+L +Q EG+ F R C++ D+MGLGKT Q++ S
Sbjct: 162 QLREYQLEGMNWLLFNWYNRKNCILADEMGLGKTIQSITFLS 203
>AL031667-2|CAI42977.1| 2715|Homo sapiens chromodomain helicase DNA
binding protein 6 protein.
Length = 2715
Score = 32.3 bits (70), Expect = 0.79
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Frame = +2
Query: 326 KLMPFQYEGVR---FGIARRGRCMIPDDMGLGKTFQALGIAS 442
+L +Q EG+ F R C++ D+MGLGKT Q++ S
Sbjct: 460 QLREYQLEGMNWLLFNWYNRKNCILADEMGLGKTIQSITFLS 501
>AK000368-1|BAA91116.1| 251|Homo sapiens protein ( Homo sapiens
cDNA FLJ20361 fis, clone HEP16789. ).
Length = 251
Score = 32.3 bits (70), Expect = 0.79
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Frame = +2
Query: 326 KLMPFQYEGVR---FGIARRGRCMIPDDMGLGKTFQAL 430
KL +Q EGV F C++ D+MGLGKT Q++
Sbjct: 80 KLREYQLEGVNWLLFNWYNMRNCILADEMGLGKTIQSI 117
>AF525085-1|AAN59903.1| 488|Homo sapiens RIGB protein.
Length = 488
Score = 32.3 bits (70), Expect = 0.79
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Frame = +2
Query: 326 KLMPFQYEGVR---FGIARRGRCMIPDDMGLGKTFQALGIAS 442
+L +Q EG+ F R C++ D+MGLGKT Q++ S
Sbjct: 126 QLREYQLEGMNWLLFNWYNRKNCILADEMGLGKTIQSITFLS 167
>AB037837-1|BAA92654.1| 1967|Homo sapiens KIAA1416 protein protein.
Length = 1967
Score = 32.3 bits (70), Expect = 0.79
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Frame = +2
Query: 326 KLMPFQYEGVR---FGIARRGRCMIPDDMGLGKTFQAL 430
KL +Q EGV F C++ D+MGLGKT Q++
Sbjct: 205 KLREYQLEGVNWLLFNWYNMRNCILADEMGLGKTIQSI 242
>DQ333316-1|ABD24032.1| 2881|Homo sapiens PRIC320 isoform 1 protein.
Length = 2881
Score = 31.9 bits (69), Expect = 1.0
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
Frame = +2
Query: 326 KLMPFQYEGVR---FGIARRGRCMIPDDMGLGKTFQAL 430
+L +Q EG+ F R C++ D+MGLGKT Q++
Sbjct: 859 QLREYQLEGLNWLLFNWYNRRNCILADEMGLGKTIQSI 896
>AY647157-1|AAT66509.1| 2881|Homo sapiens KISH2 protein.
Length = 2881
Score = 31.9 bits (69), Expect = 1.0
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
Frame = +2
Query: 326 KLMPFQYEGVR---FGIARRGRCMIPDDMGLGKTFQAL 430
+L +Q EG+ F R C++ D+MGLGKT Q++
Sbjct: 859 QLREYQLEGLNWLLFNWYNRRNCILADEMGLGKTIQSI 896
>AY243500-1|AAQ24287.1| 2897|Homo sapiens chromatin remodeling
factor CHROM1 protein.
Length = 2897
Score = 31.9 bits (69), Expect = 1.0
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
Frame = +2
Query: 326 KLMPFQYEGVR---FGIARRGRCMIPDDMGLGKTFQAL 430
+L +Q EG+ F R C++ D+MGLGKT Q++
Sbjct: 859 QLREYQLEGLNWLLFNWYNRRNCILADEMGLGKTIQSI 896
>AL035406-11|CAI19894.1| 1195|Homo sapiens chromodomain helicase DNA
binding protein 5 protein.
Length = 1195
Score = 31.9 bits (69), Expect = 1.0
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 5/59 (8%)
Frame = +2
Query: 269 PTIDPNL-IDLTP-VEETLRCKLMPFQYEGV---RFGIARRGRCMIPDDMGLGKTFQAL 430
P +DP + D P ++ L P+Q EG+ RF A+ ++ D+MGLGKT Q +
Sbjct: 194 PIVDPTVKFDKQPWYIDSTGGTLHPYQLEGLNWLRFSWAQGTDTILADEMGLGKTVQTI 252
>AL035406-9|CAI19891.1| 1954|Homo sapiens chromodomain helicase DNA
binding protein 5 protein.
Length = 1954
Score = 31.9 bits (69), Expect = 1.0
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 5/59 (8%)
Frame = +2
Query: 269 PTIDPNL-IDLTP-VEETLRCKLMPFQYEGV---RFGIARRGRCMIPDDMGLGKTFQAL 430
P +DP + D P ++ L P+Q EG+ RF A+ ++ D+MGLGKT Q +
Sbjct: 678 PIVDPTVKFDKQPWYIDSTGGTLHPYQLEGLNWLRFSWAQGTDTILADEMGLGKTVQTI 736
>AL031847-11|CAI19451.1| 1195|Homo sapiens chromodomain helicase DNA
binding protein 5 protein.
Length = 1195
Score = 31.9 bits (69), Expect = 1.0
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 5/59 (8%)
Frame = +2
Query: 269 PTIDPNL-IDLTP-VEETLRCKLMPFQYEGV---RFGIARRGRCMIPDDMGLGKTFQAL 430
P +DP + D P ++ L P+Q EG+ RF A+ ++ D+MGLGKT Q +
Sbjct: 194 PIVDPTVKFDKQPWYIDSTGGTLHPYQLEGLNWLRFSWAQGTDTILADEMGLGKTVQTI 252
>AL031847-10|CAI19450.1| 1954|Homo sapiens chromodomain helicase DNA
binding protein 5 protein.
Length = 1954
Score = 31.9 bits (69), Expect = 1.0
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 5/59 (8%)
Frame = +2
Query: 269 PTIDPNL-IDLTP-VEETLRCKLMPFQYEGV---RFGIARRGRCMIPDDMGLGKTFQAL 430
P +DP + D P ++ L P+Q EG+ RF A+ ++ D+MGLGKT Q +
Sbjct: 678 PIVDPTVKFDKQPWYIDSTGGTLHPYQLEGLNWLRFSWAQGTDTILADEMGLGKTVQTI 736
>AK127046-1|BAC86802.1| 1225|Homo sapiens protein ( Homo sapiens
cDNA FLJ45103 fis, clone BRAWH3032571, moderately
similar to Chromodomain helicase-DNA-binding protein 4.
).
Length = 1225
Score = 31.9 bits (69), Expect = 1.0
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 5/59 (8%)
Frame = +2
Query: 269 PTIDPNL-IDLTP-VEETLRCKLMPFQYEGV---RFGIARRGRCMIPDDMGLGKTFQAL 430
P +DP + D P ++ L P+Q EG+ RF A+ ++ D+MGLGKT Q +
Sbjct: 678 PIVDPTVKFDKQPWYIDSTGGTLHPYQLEGLNWLRFSWAQGTDTILADEMGLGKTVQTI 736
>AF425231-1|AAL98962.1| 1954|Homo sapiens chromodomain helicase DNA
binding protein 5 protein.
Length = 1954
Score = 31.9 bits (69), Expect = 1.0
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 5/59 (8%)
Frame = +2
Query: 269 PTIDPNL-IDLTP-VEETLRCKLMPFQYEGV---RFGIARRGRCMIPDDMGLGKTFQAL 430
P +DP + D P ++ L P+Q EG+ RF A+ ++ D+MGLGKT Q +
Sbjct: 678 PIVDPTVKFDKQPWYIDSTGGTLHPYQLEGLNWLRFSWAQGTDTILADEMGLGKTVQTI 736
>AB002306-1|BAA20767.3| 2759|Homo sapiens KIAA0308 protein.
Length = 2759
Score = 31.9 bits (69), Expect = 1.0
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
Frame = +2
Query: 326 KLMPFQYEGVR---FGIARRGRCMIPDDMGLGKTFQAL 430
+L +Q EG+ F R C++ D+MGLGKT Q++
Sbjct: 736 QLREYQLEGLNWLLFNWYNRRNCILADEMGLGKTIQSI 773
>X86691-1|CAA60384.1| 1912|Homo sapiens Mi-2 protein protein.
Length = 1912
Score = 31.5 bits (68), Expect = 1.4
Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 6/66 (9%)
Frame = +2
Query: 269 PTIDPNLIDLTPVE--ETLRCKLMPFQYEGV---RFGIARRGRCMIPDDMGLGKTFQ-AL 430
PT+DP + E + L P+Q EG+ RF A+ ++ D+MGLGKT Q A+
Sbjct: 704 PTVDPTVKYERQPEYLDATGGTLHPYQMEGLNWLRFSWAQGTDTILADEMGLGKTVQTAV 763
Query: 431 GIASYY 448
+ S Y
Sbjct: 764 FLYSLY 769
>BC038596-1|AAH38596.1| 1937|Homo sapiens CHD4 protein protein.
Length = 1937
Score = 31.5 bits (68), Expect = 1.4
Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 6/66 (9%)
Frame = +2
Query: 269 PTIDPNLIDLTPVE--ETLRCKLMPFQYEGV---RFGIARRGRCMIPDDMGLGKTFQ-AL 430
PT+DP + E + L P+Q EG+ RF A+ ++ D+MGLGKT Q A+
Sbjct: 701 PTVDPTVKYERQPEYLDATGGTLHPYQMEGLNWLRFSWAQGTDTILADEMGLGKTVQTAV 760
Query: 431 GIASYY 448
+ S Y
Sbjct: 761 FLYSLY 766
>EF560738-1|ABQ59048.1| 900|Homo sapiens CHD1L protein protein.
Length = 900
Score = 31.1 bits (67), Expect = 1.8
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Frame = +2
Query: 329 LMPFQYEGVRFGIAR---RGRCMIPDDMGLGKTFQALGIASY 445
L +Q EGV + R + C++ D+MGLGKT Q + + Y
Sbjct: 46 LRSYQLEGVNWLAQRFHCQNGCILGDEMGLGKTCQTIALFIY 87
>BC043501-1|AAH43501.1| 890|Homo sapiens Similar to RIKEN cDNA
4432404A22 gene protein.
Length = 890
Score = 31.1 bits (67), Expect = 1.8
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Frame = +2
Query: 329 LMPFQYEGVRFGIAR---RGRCMIPDDMGLGKTFQALGIASY 445
L +Q EGV + R + C++ D+MGLGKT Q + + Y
Sbjct: 39 LRSYQLEGVNWLAQRFHCQNGCILGDEMGLGKTCQTIALFIY 80
>BC005038-1|AAH05038.1| 789|Homo sapiens CHD1L protein protein.
Length = 789
Score = 31.1 bits (67), Expect = 1.8
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Frame = +2
Query: 329 LMPFQYEGVRFGIAR---RGRCMIPDDMGLGKTFQALGIASY 445
L +Q EGV + R + C++ D+MGLGKT Q + + Y
Sbjct: 32 LRSYQLEGVNWLAQRFHCQNGCILGDEMGLGKTCQTIALFIY 73
>BC001171-1|AAH01171.1| 896|Homo sapiens Unknown (protein for
IMAGE:3355762) protein.
Length = 896
Score = 31.1 bits (67), Expect = 1.8
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Frame = +2
Query: 329 LMPFQYEGVRFGIAR---RGRCMIPDDMGLGKTFQALGIASY 445
L +Q EGV + R + C++ D+MGLGKT Q + + Y
Sbjct: 45 LRSYQLEGVNWLAQRFHCQNGCILGDEMGLGKTCQTIALFIY 86
>AL356378-7|CAH72650.1| 897|Homo sapiens chromodomain helicase DNA
binding protein 1-like protein.
Length = 897
Score = 31.1 bits (67), Expect = 1.8
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Frame = +2
Query: 329 LMPFQYEGVRFGIAR---RGRCMIPDDMGLGKTFQALGIASY 445
L +Q EGV + R + C++ D+MGLGKT Q + + Y
Sbjct: 46 LRSYQLEGVNWLAQRFHCQNGCILGDEMGLGKTCQTIALFIY 87
>AK001342-1|BAA91637.1| 831|Homo sapiens protein ( Homo sapiens
cDNA FLJ10480 fis, clone NT2RP2000126, weakly similar to
POSSIBLE GLOBAL TRANSCRIPTION ACTIVATOR SNF2L. ).
Length = 831
Score = 31.1 bits (67), Expect = 1.8
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Frame = +2
Query: 329 LMPFQYEGVRFGIAR---RGRCMIPDDMGLGKTFQALGIASY 445
L +Q EGV + R + C++ D+MGLGKT Q + + Y
Sbjct: 46 LRSYQLEGVNWLAQRFHCQNGCILGDEMGLGKTCQTIALFIY 87
>AF537213-1|AAO49505.1| 897|Homo sapiens ALC1 protein.
Length = 897
Score = 31.1 bits (67), Expect = 1.8
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Frame = +2
Query: 329 LMPFQYEGVRFGIAR---RGRCMIPDDMGLGKTFQALGIASY 445
L +Q EGV + R + C++ D+MGLGKT Q + + Y
Sbjct: 46 LRSYQLEGVNWLAQRFHCQNGCILGDEMGLGKTCQTIALFIY 87
>AK128030-1|BAC87237.1| 2427|Homo sapiens protein ( Homo sapiens
cDNA FLJ46149 fis, clone TESTI4000621, moderately
similar to Homo sapiens Snf2-related CBP activator
protein (SRCAP). ).
Length = 2427
Score = 30.3 bits (65), Expect = 3.2
Identities = 15/52 (28%), Positives = 31/52 (59%), Gaps = 3/52 (5%)
Frame = +2
Query: 299 TPVEETLRCKLMPFQYEGVRFGIA---RRGRCMIPDDMGLGKTFQALGIASY 445
TP+ LR +L +Q+ G+ + + ++ ++ D+MGLGKT Q + + ++
Sbjct: 608 TPIPLLLRGQLREYQHIGLDWLVTMYEKKLNGILADEMGLGKTIQTISLLAH 659
>AF143946-1|AAD39760.1| 2971|Homo sapiens transcriptional activator
SRCAP protein.
Length = 2971
Score = 30.3 bits (65), Expect = 3.2
Identities = 15/52 (28%), Positives = 31/52 (59%), Gaps = 3/52 (5%)
Frame = +2
Query: 299 TPVEETLRCKLMPFQYEGVRFGIA---RRGRCMIPDDMGLGKTFQALGIASY 445
TP+ LR +L +Q+ G+ + + ++ ++ D+MGLGKT Q + + ++
Sbjct: 411 TPIPLLLRGQLREYQHIGLDWLVTMYEKKLNGILADEMGLGKTIQTISLLAH 462
>AB002307-1|BAA20768.2| 3053|Homo sapiens KIAA0309 protein.
Length = 3053
Score = 30.3 bits (65), Expect = 3.2
Identities = 15/52 (28%), Positives = 31/52 (59%), Gaps = 3/52 (5%)
Frame = +2
Query: 299 TPVEETLRCKLMPFQYEGVRFGIA---RRGRCMIPDDMGLGKTFQALGIASY 445
TP+ LR +L +Q+ G+ + + ++ ++ D+MGLGKT Q + + ++
Sbjct: 589 TPIPLLLRGQLREYQHIGLDWLVTMYEKKLNGILADEMGLGKTIQTISLLAH 640
>EU069463-1|ABU25227.1| 1250|Homo sapiens Plk1-interacting
checkpoint helicase protein.
Length = 1250
Score = 29.9 bits (64), Expect = 4.2
Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
Frame = +2
Query: 317 LRCKLMPFQYEGVRF--GIARRGRC--MIPDDMGLGKTFQALGIAS 442
L +L Q EG+ F + R GR ++ DDMGLGKT Q + S
Sbjct: 92 LHNQLFEHQKEGIAFLYSLYRDGRKGGILADDMGLGKTVQIIAFLS 137
>BC117134-1|AAI17135.1| 1709|Homo sapiens chromodomain helicase DNA
binding protein 1 protein.
Length = 1709
Score = 29.9 bits (64), Expect = 4.2
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +2
Query: 383 CMIPDDMGLGKTFQALGIASY 445
C++ D+MGLGKT Q + +Y
Sbjct: 502 CILADEMGLGKTIQTISFLNY 522
>BC111486-1|AAI11487.1| 1250|Homo sapiens excision repair
cross-complementing rodent repair deficiency,
complementation g protein.
Length = 1250
Score = 29.9 bits (64), Expect = 4.2
Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
Frame = +2
Query: 317 LRCKLMPFQYEGVRF--GIARRGRC--MIPDDMGLGKTFQALGIAS 442
L +L Q EG+ F + R GR ++ DDMGLGKT Q + S
Sbjct: 92 LHNQLFEHQKEGIAFLYSLYRDGRKGGILADDMGLGKTVQIIAFLS 137
>BC068595-1|AAH68595.1| 498|Homo sapiens beta
1,3-galactosyltransferase-like protein.
Length = 498
Score = 29.9 bits (64), Expect = 4.2
Identities = 18/38 (47%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Frame = +2
Query: 332 MPFQYEGVRFGIARRGRCM---IPDDMGLGKTFQALGI 436
M F E VR +A + RC PDDM LG F LGI
Sbjct: 396 MVFSREAVRRLLASKCRCYSNDAPDDMVLGMCFSGLGI 433
>AY190526-1|AAO37647.1| 498|Homo sapiens
beta3-glycosyltransferase-like protein.
Length = 498
Score = 29.9 bits (64), Expect = 4.2
Identities = 18/38 (47%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Frame = +2
Query: 332 MPFQYEGVRFGIARRGRCM---IPDDMGLGKTFQALGI 436
M F E VR +A + RC PDDM LG F LGI
Sbjct: 396 MVFSREAVRRLLASKCRCYSNDAPDDMVLGMCFSGLGI 433
>AL138965-2|CAH73049.2| 498|Homo sapiens beta
1,3-galactosyltransferase-like protein.
Length = 498
Score = 29.9 bits (64), Expect = 4.2
Identities = 18/38 (47%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Frame = +2
Query: 332 MPFQYEGVRFGIARRGRCM---IPDDMGLGKTFQALGI 436
M F E VR +A + RC PDDM LG F LGI
Sbjct: 396 MVFSREAVRRLLASKCRCYSNDAPDDMVLGMCFSGLGI 433
>AL137142-6|CAI12432.2| 498|Homo sapiens beta
1,3-galactosyltransferase-like protein.
Length = 498
Score = 29.9 bits (64), Expect = 4.2
Identities = 18/38 (47%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Frame = +2
Query: 332 MPFQYEGVRFGIARRGRCM---IPDDMGLGKTFQALGI 436
M F E VR +A + RC PDDM LG F LGI
Sbjct: 396 MVFSREAVRRLLASKCRCYSNDAPDDMVLGMCFSGLGI 433
>AF006513-1|AAB87381.1| 1709|Homo sapiens CHD1 protein.
Length = 1709
Score = 29.9 bits (64), Expect = 4.2
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +2
Query: 383 CMIPDDMGLGKTFQALGIASY 445
C++ D+MGLGKT Q + +Y
Sbjct: 502 CILADEMGLGKTIQTISFLNY 522
>AB101481-1|BAD13528.1| 498|Homo sapiens glucosyltransferase
protein.
Length = 498
Score = 29.9 bits (64), Expect = 4.2
Identities = 18/38 (47%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Frame = +2
Query: 332 MPFQYEGVRFGIARRGRCM---IPDDMGLGKTFQALGI 436
M F E VR +A + RC PDDM LG F LGI
Sbjct: 396 MVFSREAVRRLLASKCRCYSNDAPDDMVLGMCFSGLGI 433
>AY481573-1|AAS47698.1| 5202|Homo sapiens Usher syndrome 2A isoform B
protein.
Length = 5202
Score = 29.5 bits (63), Expect = 5.5
Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Frame = +2
Query: 200 VATLAPHVVLGNLPLSVLKVLREPTIDPNLIDLTPVEETLRCKLMPF-QYEGVRFGIARR 376
VA + P +++ +P+ +L + ++ P + + TL L PF QYE +R +
Sbjct: 3791 VAWIPPGILIPEIPVEYNVLLNDGSVTPLAFSVGHHQSTLLENLTPFTQYE-IRIQACQN 3849
Query: 377 GRCMIPDDM 403
G C + M
Sbjct: 3850 GSCGVSSRM 3858
>AL513305-1|CAH73621.1| 5202|Homo sapiens Usher syndrome 2A (autosomal
recessive, mild) protein.
Length = 5202
Score = 29.5 bits (63), Expect = 5.5
Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Frame = +2
Query: 200 VATLAPHVVLGNLPLSVLKVLREPTIDPNLIDLTPVEETLRCKLMPF-QYEGVRFGIARR 376
VA + P +++ +P+ +L + ++ P + + TL L PF QYE +R +
Sbjct: 3791 VAWIPPGILIPEIPVEYNVLLNDGSVTPLAFSVGHHQSTLLENLTPFTQYE-IRIQACQN 3849
Query: 377 GRCMIPDDM 403
G C + M
Sbjct: 3850 GSCGVSSRM 3858
>AL445650-4|CAH70621.1| 5202|Homo sapiens Usher syndrome 2A (autosomal
recessive, mild) protein.
Length = 5202
Score = 29.5 bits (63), Expect = 5.5
Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Frame = +2
Query: 200 VATLAPHVVLGNLPLSVLKVLREPTIDPNLIDLTPVEETLRCKLMPF-QYEGVRFGIARR 376
VA + P +++ +P+ +L + ++ P + + TL L PF QYE +R +
Sbjct: 3791 VAWIPPGILIPEIPVEYNVLLNDGSVTPLAFSVGHHQSTLLENLTPFTQYE-IRIQACQN 3849
Query: 377 GRCMIPDDM 403
G C + M
Sbjct: 3850 GSCGVSSRM 3858
>AL358858-2|CAH71588.1| 5202|Homo sapiens Usher syndrome 2A (autosomal
recessive, mild) protein.
Length = 5202
Score = 29.5 bits (63), Expect = 5.5
Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Frame = +2
Query: 200 VATLAPHVVLGNLPLSVLKVLREPTIDPNLIDLTPVEETLRCKLMPF-QYEGVRFGIARR 376
VA + P +++ +P+ +L + ++ P + + TL L PF QYE +R +
Sbjct: 3791 VAWIPPGILIPEIPVEYNVLLNDGSVTPLAFSVGHHQSTLLENLTPFTQYE-IRIQACQN 3849
Query: 377 GRCMIPDDM 403
G C + M
Sbjct: 3850 GSCGVSSRM 3858
>AL358452-1|CAI19189.1| 5202|Homo sapiens Usher syndrome 2A (autosomal
recessive, mild) protein.
Length = 5202
Score = 29.5 bits (63), Expect = 5.5
Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Frame = +2
Query: 200 VATLAPHVVLGNLPLSVLKVLREPTIDPNLIDLTPVEETLRCKLMPF-QYEGVRFGIARR 376
VA + P +++ +P+ +L + ++ P + + TL L PF QYE +R +
Sbjct: 3791 VAWIPPGILIPEIPVEYNVLLNDGSVTPLAFSVGHHQSTLLENLTPFTQYE-IRIQACQN 3849
Query: 377 GRCMIPDDM 403
G C + M
Sbjct: 3850 GSCGVSSRM 3858
>AL139259-1|CAI23041.1| 5202|Homo sapiens Usher syndrome 2A (autosomal
recessive, mild) protein.
Length = 5202
Score = 29.5 bits (63), Expect = 5.5
Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Frame = +2
Query: 200 VATLAPHVVLGNLPLSVLKVLREPTIDPNLIDLTPVEETLRCKLMPF-QYEGVRFGIARR 376
VA + P +++ +P+ +L + ++ P + + TL L PF QYE +R +
Sbjct: 3791 VAWIPPGILIPEIPVEYNVLLNDGSVTPLAFSVGHHQSTLLENLTPFTQYE-IRIQACQN 3849
Query: 377 GRCMIPDDM 403
G C + M
Sbjct: 3850 GSCGVSSRM 3858
>AF006514-1|AAB87382.1| 1739|Homo sapiens CHD2 protein.
Length = 1739
Score = 29.5 bits (63), Expect = 5.5
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Frame = +2
Query: 326 KLMPFQYEGVRF---GIARRGRCMIPDDMGLGKTFQALGIASY 445
+L +Q EG+ + + ++ D+MGLGKT Q + SY
Sbjct: 483 ELRDYQLEGLNWLAHSWCKNNSVILADEMGLGKTIQTISFLSY 525
>X97795-1|CAA66379.1| 747|Homo sapiens RAD54 protein.
Length = 747
Score = 29.1 bits (62), Expect = 7.3
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 8/50 (16%)
Frame = +2
Query: 305 VEETLRCKLMPFQYEGVRF--------GIARRGRCMIPDDMGLGKTFQAL 430
V+ L L P Q EGV+F I C++ D+MGLGKT Q +
Sbjct: 145 VDPILSKVLRPHQREGVKFLWECVTSRRIPGSHGCIMADEMGLGKTLQCI 194
>BC121060-1|AAI21061.1| 747|Homo sapiens RAD54-like (S. cerevisiae)
protein.
Length = 747
Score = 29.1 bits (62), Expect = 7.3
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 8/50 (16%)
Frame = +2
Query: 305 VEETLRCKLMPFQYEGVRF--------GIARRGRCMIPDDMGLGKTFQAL 430
V+ L L P Q EGV+F I C++ D+MGLGKT Q +
Sbjct: 145 VDPILSKVLRPHQREGVKFLWECVTSRRIPGSHGCIMADEMGLGKTLQCI 194
>BC121059-1|AAI21060.1| 747|Homo sapiens RAD54-like (S. cerevisiae)
protein.
Length = 747
Score = 29.1 bits (62), Expect = 7.3
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 8/50 (16%)
Frame = +2
Query: 305 VEETLRCKLMPFQYEGVRF--------GIARRGRCMIPDDMGLGKTFQAL 430
V+ L L P Q EGV+F I C++ D+MGLGKT Q +
Sbjct: 145 VDPILSKVLRPHQREGVKFLWECVTSRRIPGSHGCIMADEMGLGKTLQCI 194
>AY623117-1|AAT38113.1| 747|Homo sapiens RAD54-like (S. cerevisiae)
protein.
Length = 747
Score = 29.1 bits (62), Expect = 7.3
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 8/50 (16%)
Frame = +2
Query: 305 VEETLRCKLMPFQYEGVRF--------GIARRGRCMIPDDMGLGKTFQAL 430
V+ L L P Q EGV+F I C++ D+MGLGKT Q +
Sbjct: 145 VDPILSKVLRPHQREGVKFLWECVTSRRIPGSHGCIMADEMGLGKTLQCI 194
>AL121602-1|CAI22117.1| 747|Homo sapiens RAD54-like (S. cerevisiae)
protein.
Length = 747
Score = 29.1 bits (62), Expect = 7.3
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 8/50 (16%)
Frame = +2
Query: 305 VEETLRCKLMPFQYEGVRF--------GIARRGRCMIPDDMGLGKTFQAL 430
V+ L L P Q EGV+F I C++ D+MGLGKT Q +
Sbjct: 145 VDPILSKVLRPHQREGVKFLWECVTSRRIPGSHGCIMADEMGLGKTLQCI 194
>AK091315-1|BAC03635.1| 125|Homo sapiens protein ( Homo sapiens
cDNA FLJ33996 fis, clone DFNES2008881. ).
Length = 125
Score = 28.7 bits (61), Expect = 9.7
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -2
Query: 397 IWYHTSSATCYTKPDPFVLKWHQLTAQCF 311
IW H S++ KP P LK+H L +CF
Sbjct: 5 IW-HPSASLIGKKPPPLYLKFHFLKKKCF 32
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 59,821,345
Number of Sequences: 237096
Number of extensions: 1076560
Number of successful extensions: 2343
Number of sequences better than 10.0: 65
Number of HSP's better than 10.0 without gapping: 2264
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2335
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 3701294870
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -