Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_N17
         (449 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    23   2.0  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          21   4.7  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      21   4.7  
S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor prot...    21   8.2  
S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor prot...    21   8.2  

>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 22.6 bits (46), Expect = 2.0
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 213 LHMWS*EISHCLC*RY*GNLQ 275
           LH+   E+ H +C R+ GN+Q
Sbjct: 114 LHICMLELGHEVCGRFYGNIQ 134


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -3

Query: 402 MSSGIIHRPRRAIPNLTPSY 343
           +S  +IHRP   +  L P Y
Sbjct: 142 LSVAVIHRPDTKLMKLPPMY 161


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -3

Query: 402 MSSGIIHRPRRAIPNLTPSY 343
           +S  +IHRP   +  L P Y
Sbjct: 142 LSVAVIHRPDTKLMKLPPMY 161


>S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor
           protein.
          Length = 169

 Score = 20.6 bits (41), Expect = 8.2
 Identities = 8/24 (33%), Positives = 11/24 (45%)
 Frame = -3

Query: 276 IVGSLNTFNTDNGRFPKTTCGANV 205
           ++G +NT       F    CG NV
Sbjct: 30  VIGLMNTMTHTTNAFCLPFCGPNV 53


>S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor
           protein.
          Length = 168

 Score = 20.6 bits (41), Expect = 8.2
 Identities = 8/24 (33%), Positives = 11/24 (45%)
 Frame = -3

Query: 276 IVGSLNTFNTDNGRFPKTTCGANV 205
           ++G +NT       F    CG NV
Sbjct: 29  VIGLMNTMTHTTNAFCLPFCGPNV 52


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,355
Number of Sequences: 438
Number of extensions: 2252
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11820384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)