Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_N16
         (560 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23D3.10c |eng2||endo-1,3-beta-glucanase Eng2|Schizosaccharom...    29   0.35 
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual    27   1.9  
SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|c...    27   2.5  
SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr 1|...    26   3.3  
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces...    26   3.3  
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc...    25   5.8  
SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces pom...    25   7.6  
SPBC1703.08c |||5-formyltetrahydrofolate cyclo-ligase|Schizosacc...    25   7.6  

>SPAC23D3.10c |eng2||endo-1,3-beta-glucanase
           Eng2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 706

 Score = 29.5 bits (63), Expect = 0.35
 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
 Frame = -2

Query: 277 PLPVTEFSGAPEPSCVTKLYVAGATDIFAILLKKMNLSSLYSTR---LQYVRICSSLSNI 107
           P+P    S    P+ +  +  A ATDI   ++   NL S+Y++      Y ++C   S I
Sbjct: 339 PIPWNGGSNTYSPTALAAIRAACATDINFDVVNASNLDSMYTSGKIVAMYAQVCLVASRI 398

Query: 106 L 104
           L
Sbjct: 399 L 399


>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 978

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = +3

Query: 78  WYLYKHFYKSILLRLEQIRTYCNLVEYKELKFIFFSNIANISVAPAT 218
           WYL+  F KSI  ++         V Y E       ++ NISV+P T
Sbjct: 556 WYLFYRFVKSIKKQV---------VNYTESSLAMLGDLLNISVSPVT 593


>SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 436

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 11/40 (27%), Positives = 23/40 (57%)
 Frame = +3

Query: 24  ISAKLFLLLTHWCLFVSRWYLYKHFYKSILLRLEQIRTYC 143
           +SA++FL      L ++R  +Y   +++ L  L+++  YC
Sbjct: 301 VSAQIFLWCLFGVLMIARGLIYLALFRNFLNILKRMAIYC 340


>SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = -1

Query: 365 TWTNAFCAAFFWSVAL*PCCFFILD 291
           TW NAF   F  +  L  C F ILD
Sbjct: 442 TWRNAFFDEFIGTAVLVGCLFAILD 466


>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 897

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
 Frame = +3

Query: 21  KISAKLFLLLTHWCLFVSRWYLYKHFYKSILLRLEQIRTYCNLV--EYKELKFIFFSNIA 194
           K+S    LLL H  L V      K F   + L   +I  +C+LV   Y++    ++S   
Sbjct: 643 KLSPWNMLLLLHGLLSVDISLKQKKFVPGMKLSKREIDGWCSLVFEAYQKWNRCYYSIFL 702

Query: 195 NISVAPATYNLVTQ 236
           N ++ P  +  V +
Sbjct: 703 NNNILPFGHPFVKE 716


>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1016

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = -2

Query: 313 PVVSSS*TFSQQPLPVTEFSGAPEPSCVTKLYVAGAT 203
           PV SSS T S  P P T  S  P P+  +    A +T
Sbjct: 840 PVQSSSTTSSITPTPTTTSSITPTPTTTSTTTTAQST 876


>SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 986

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +3

Query: 93  HFYKSILLRLEQIRTYCNLVEYKELKFIFFSNIANISV 206
           HF  S LL  + +  +  L+      F++FSN  NIS+
Sbjct: 795 HFLTSSLLNEQGLTAFEVLMTVWCDNFVYFSNFKNISI 832


>SPBC1703.08c |||5-formyltetrahydrofolate
           cyclo-ligase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 204

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +1

Query: 511 KNCKNICLFLLKKKKK 558
           K CKN+CL++   KK+
Sbjct: 42  KRCKNVCLYMNMPKKE 57


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,030,132
Number of Sequences: 5004
Number of extensions: 39802
Number of successful extensions: 121
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)