Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_N14
         (546 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              27   0.16 
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    23   1.5  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   2.0  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   2.0  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   3.5  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 26.6 bits (56), Expect = 0.16
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = +1

Query: 154 SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 264
           +DT+   K KI  K  I PD + L+   KQ E G TL
Sbjct: 732 TDTVLAYKPKILGKPTISPDSRHLVTLDKQ-ETGVTL 767


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = +3

Query: 93  HNADFRKNPNGENYHPRSRGFRYDRKCK 176
           +N +++ N N  NY+  +    Y+  CK
Sbjct: 325 NNNNYKYNYNNNNYNNNNYNNNYNNNCK 352


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 16/68 (23%), Positives = 27/68 (39%)
 Frame = +1

Query: 148  EASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGT 327
            ++ DT E  K  +Q KEG     Q+  F G  L     + +       T+ ++     G 
Sbjct: 931  KSQDTTEVTKYILQYKEGDAGIWQQQEFTGPPLPYAALIDELKPATRYTIRVIAEGPAGR 990

Query: 328  IEPSLRIL 351
              PS  ++
Sbjct: 991  SVPSAELI 998



 Score = 21.0 bits (42), Expect = 8.2
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +1

Query: 370  AENDLSQVLCSSPSSCNQLQEDKCGH 447
            +E+D  Q+  S   S NQL   K  H
Sbjct: 1785 SESDPDQLTSSRTESSNQLDAGKLKH 1810


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 16/68 (23%), Positives = 27/68 (39%)
 Frame = +1

Query: 148  EASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGT 327
            ++ DT E  K  +Q KEG     Q+  F G  L     + +       T+ ++     G 
Sbjct: 927  KSQDTTEVTKYILQYKEGDAGIWQQQEFTGPPLPYAALIDELKPATRYTIRVIAEGPAGR 986

Query: 328  IEPSLRIL 351
              PS  ++
Sbjct: 987  SVPSAELI 994



 Score = 21.0 bits (42), Expect = 8.2
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +1

Query: 370  AENDLSQVLCSSPSSCNQLQEDKCGH 447
            +E+D  Q+  S   S NQL   K  H
Sbjct: 1781 SESDPDQLTSSRTESSNQLDAGKLKH 1806


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -2

Query: 434 SSCNWLHEDGDEHSTCD 384
           +SC WL E G++  + D
Sbjct: 29  TSCKWLSEGGNDTRSAD 45


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,366
Number of Sequences: 438
Number of extensions: 3806
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15581757
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)