Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_N13
         (631 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac...    36   0.004
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo...    36   0.006
SPAC2F7.06c |pol4||DNA polymerase X family|Schizosaccharomyces p...    29   0.42 
SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces p...    28   1.3  
SPAC3G9.14 |sak1||transcriptional repressor Sak1|Schizosaccharom...    27   2.2  
SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase Wis1|Schizosaccha...    27   3.0  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    27   3.0  
SPCC191.01 ||SPCC417.13|sequence orphan|Schizosaccharomyces pomb...    26   3.9  
SPAC23A1.04c |mnl1||alpha mannosidase-like protein|Schizosacchar...    25   9.0  
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    25   9.0  
SPCC4G3.09c |gyp3||GTPase activating protein Gyp3|Schizosaccharo...    25   9.0  
SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|c...    25   9.0  

>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
            Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1373

 Score = 36.3 bits (80), Expect = 0.004
 Identities = 15/27 (55%), Positives = 18/27 (66%)
 Frame = +2

Query: 281  WHRRHDYWLLAGIVTHGYGRWQDIQND 361
            W  + D  LLAGI  HG+G WQ I+ND
Sbjct: 1132 WGIKEDSMLLAGINKHGFGCWQAIKND 1158


>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1388

 Score = 35.5 bits (78), Expect = 0.006
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = +2

Query: 281  WHRRHDYWLLAGIVTHGYGRWQDIQNDLRFAIINEPFKMD 400
            W  R D  LL+GI  HG+G W +I++D    + ++ F  D
Sbjct: 1123 WGPREDSMLLSGICKHGFGAWLEIRDDPELKMKDKIFLED 1162


>SPAC2F7.06c |pol4||DNA polymerase X family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 506

 Score = 29.5 bits (63), Expect = 0.42
 Identities = 11/21 (52%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
 Frame = +2

Query: 233 WLNEERAA-APGREYEIWHRR 292
           WLNE + +  PG  Y IWHR+
Sbjct: 80  WLNEPKESLTPGNPYVIWHRK 100


>SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 390

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 13/34 (38%), Positives = 15/34 (44%)
 Frame = +2

Query: 281 WHRRHDYWLLAGIVTHGYGRWQDIQNDLRFAIIN 382
           W  +    LL G   HG G W+ I  D RF   N
Sbjct: 58  WTEKETNDLLRGCQIHGVGNWKKILLDERFHFTN 91


>SPAC3G9.14 |sak1||transcriptional repressor
           Sak1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 766

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +2

Query: 512 NLTQDPNHPAMSLNARFAEVECLAESHQHLSKESLA 619
           ++T +  HP  S   +  E++ LA  H+H S ESLA
Sbjct: 46  SITSESAHPRGSDLEQETELKRLALEHEHYSLESLA 81


>SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase
           Wis1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 605

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -1

Query: 574 LDLREPRVQRHRRMVRVLGQVQVGSPP 494
           LD+++P  +  R +    GQ  +GSPP
Sbjct: 105 LDMKDPSEKPRRSLPTAAGQNNIGSPP 131


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = +3

Query: 327 TATGAGRTYKTTCGSLSSTNRSKWTSARGTSSRLRISS 440
           T++ A  +  T+  SL+S++ +  TSA  TSS L  SS
Sbjct: 76  TSSSAASSSLTSSSSLASSSTNSTTSASPTSSSLTSSS 113


>SPCC191.01 ||SPCC417.13|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 178

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 197 IADGGFTELHTLWLNEERAAAPGREY 274
           I++  FT+L  LWL + RA  P  ++
Sbjct: 50  ISEPKFTQLMELWLEKSRAEVPDADF 75


>SPAC23A1.04c |mnl1||alpha mannosidase-like
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 787

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +2

Query: 239 NEERAAAPGREYEIWHRRHDYWLLAGIVTHGYGRW 343
           N+ +A+A    + +W RR    LL   +    GRW
Sbjct: 224 NKFKASAENAFFSVWKRRSGIGLLGNSIDVLSGRW 258


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2052

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = +2

Query: 455 KLLEQALVIEEQLRRAAYLNLTQDPNHPAMSLNARFAEVECLAES 589
           +L+    VI  +    A+L   ++P+H  M L+ +F     LAE+
Sbjct: 629 RLMGIRFVIHYRSLATAFLFADREPDHSVMFLSVQFFTTPSLAEA 673


>SPCC4G3.09c |gyp3||GTPase activating protein
           Gyp3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 635

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 10/46 (21%), Positives = 24/46 (52%)
 Frame = +2

Query: 476 VIEEQLRRAAYLNLTQDPNHPAMSLNARFAEVECLAESHQHLSKES 613
           V +++   A+ L ++    H     ++RF++   +++ H HL K +
Sbjct: 590 VAKKRNSSASKLEMSDSSKHHLSRSSSRFSKSHIISQLHNHLKKST 635


>SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 594

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -2

Query: 597 CWCDSARHSTSANR 556
           CW D +RH++  NR
Sbjct: 69  CWADESRHASPGNR 82


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,433,844
Number of Sequences: 5004
Number of extensions: 23990
Number of successful extensions: 90
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)