Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_N13
(631 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL035406-9|CAI19891.1| 1954|Homo sapiens chromodomain helicase D... 286 4e-77
AL035406-1|CAI19883.1| 808|Homo sapiens chromodomain helicase D... 286 4e-77
AL031847-10|CAI19450.1| 1954|Homo sapiens chromodomain helicase ... 286 4e-77
AK126012-1|BAC86391.1| 671|Homo sapiens protein ( Homo sapiens ... 286 4e-77
AF425231-1|AAL98962.1| 1954|Homo sapiens chromodomain helicase D... 286 4e-77
AB007913-1|BAA32289.1| 978|Homo sapiens KIAA0444 protein protein. 286 4e-77
X86691-1|CAA60384.1| 1912|Homo sapiens Mi-2 protein protein. 277 2e-74
U91543-1|AAC39923.1| 2000|Homo sapiens zinc-finger helicase prot... 277 2e-74
BC110648-1|AAI10649.1| 661|Homo sapiens CHD3 protein protein. 277 2e-74
BC038596-1|AAH38596.1| 1937|Homo sapiens CHD4 protein protein. 277 2e-74
AF006515-1|AAB87383.1| 1944|Homo sapiens CHD3 protein. 277 2e-74
AF006514-1|AAB87382.1| 1739|Homo sapiens CHD2 protein. 33 0.83
BC117134-1|AAI17135.1| 1709|Homo sapiens chromodomain helicase D... 30 5.9
AF006513-1|AAB87381.1| 1709|Homo sapiens CHD1 protein. 30 5.9
>AL035406-9|CAI19891.1| 1954|Homo sapiens chromodomain helicase DNA
binding protein 5 protein.
Length = 1954
Score = 286 bits (702), Expect = 4e-77
Identities = 131/151 (86%), Positives = 141/151 (93%), Gaps = 1/151 (0%)
Frame = +2
Query: 182 KFMFNIADGGFTELHTLWLNEERAA-APGREYEIWHRRHDYWLLAGIVTHGYGRWQDIQN 358
KFMFNIADGGFTELHTLW NEERAA + G+ Y+IWHRRHDYWLLAGIVTHGY RWQDIQN
Sbjct: 1702 KFMFNIADGGFTELHTLWQNEERAAVSSGKIYDIWHRRHDYWLLAGIVTHGYARWQDIQN 1761
Query: 359 DLRFAIINEPFKMDVGKGNFLEIKNKFLARRFKLLEQALVIEEQLRRAAYLNLTQDPNHP 538
D R+ I+NEPFK +V KGN+LE+KNKFLARRFKLLEQALVIEEQLRRAAYLN+TQDPNHP
Sbjct: 1762 DPRYMILNEPFKSEVHKGNYLEMKNKFLARRFKLLEQALVIEEQLRRAAYLNMTQDPNHP 1821
Query: 539 AMSLNARFAEVECLAESHQHLSKESLAGNKP 631
AM+LNAR AEVECLAESHQHLSKESLAGNKP
Sbjct: 1822 AMALNARLAEVECLAESHQHLSKESLAGNKP 1852
>AL035406-1|CAI19883.1| 808|Homo sapiens chromodomain helicase DNA
binding protein 5 protein.
Length = 808
Score = 286 bits (702), Expect = 4e-77
Identities = 131/151 (86%), Positives = 141/151 (93%), Gaps = 1/151 (0%)
Frame = +2
Query: 182 KFMFNIADGGFTELHTLWLNEERAA-APGREYEIWHRRHDYWLLAGIVTHGYGRWQDIQN 358
KFMFNIADGGFTELHTLW NEERAA + G+ Y+IWHRRHDYWLLAGIVTHGY RWQDIQN
Sbjct: 559 KFMFNIADGGFTELHTLWQNEERAAVSSGKIYDIWHRRHDYWLLAGIVTHGYARWQDIQN 618
Query: 359 DLRFAIINEPFKMDVGKGNFLEIKNKFLARRFKLLEQALVIEEQLRRAAYLNLTQDPNHP 538
D R+ I+NEPFK +V KGN+LE+KNKFLARRFKLLEQALVIEEQLRRAAYLN+TQDPNHP
Sbjct: 619 DPRYMILNEPFKSEVHKGNYLEMKNKFLARRFKLLEQALVIEEQLRRAAYLNMTQDPNHP 678
Query: 539 AMSLNARFAEVECLAESHQHLSKESLAGNKP 631
AM+LNAR AEVECLAESHQHLSKESLAGNKP
Sbjct: 679 AMALNARLAEVECLAESHQHLSKESLAGNKP 709
>AL031847-10|CAI19450.1| 1954|Homo sapiens chromodomain helicase DNA
binding protein 5 protein.
Length = 1954
Score = 286 bits (702), Expect = 4e-77
Identities = 131/151 (86%), Positives = 141/151 (93%), Gaps = 1/151 (0%)
Frame = +2
Query: 182 KFMFNIADGGFTELHTLWLNEERAA-APGREYEIWHRRHDYWLLAGIVTHGYGRWQDIQN 358
KFMFNIADGGFTELHTLW NEERAA + G+ Y+IWHRRHDYWLLAGIVTHGY RWQDIQN
Sbjct: 1702 KFMFNIADGGFTELHTLWQNEERAAVSSGKIYDIWHRRHDYWLLAGIVTHGYARWQDIQN 1761
Query: 359 DLRFAIINEPFKMDVGKGNFLEIKNKFLARRFKLLEQALVIEEQLRRAAYLNLTQDPNHP 538
D R+ I+NEPFK +V KGN+LE+KNKFLARRFKLLEQALVIEEQLRRAAYLN+TQDPNHP
Sbjct: 1762 DPRYMILNEPFKSEVHKGNYLEMKNKFLARRFKLLEQALVIEEQLRRAAYLNMTQDPNHP 1821
Query: 539 AMSLNARFAEVECLAESHQHLSKESLAGNKP 631
AM+LNAR AEVECLAESHQHLSKESLAGNKP
Sbjct: 1822 AMALNARLAEVECLAESHQHLSKESLAGNKP 1852
>AK126012-1|BAC86391.1| 671|Homo sapiens protein ( Homo sapiens
cDNA FLJ44024 fis, clone TESTI4026524, moderately
similar to Chromodomain helicase-DNA-binding protein 4.
).
Length = 671
Score = 286 bits (702), Expect = 4e-77
Identities = 131/151 (86%), Positives = 141/151 (93%), Gaps = 1/151 (0%)
Frame = +2
Query: 182 KFMFNIADGGFTELHTLWLNEERAA-APGREYEIWHRRHDYWLLAGIVTHGYGRWQDIQN 358
KFMFNIADGGFTELHTLW NEERAA + G+ Y+IWHRRHDYWLLAGIVTHGY RWQDIQN
Sbjct: 422 KFMFNIADGGFTELHTLWQNEERAAVSSGKIYDIWHRRHDYWLLAGIVTHGYARWQDIQN 481
Query: 359 DLRFAIINEPFKMDVGKGNFLEIKNKFLARRFKLLEQALVIEEQLRRAAYLNLTQDPNHP 538
D R+ I+NEPFK +V KGN+LE+KNKFLARRFKLLEQALVIEEQLRRAAYLN+TQDPNHP
Sbjct: 482 DPRYMILNEPFKSEVHKGNYLEMKNKFLARRFKLLEQALVIEEQLRRAAYLNMTQDPNHP 541
Query: 539 AMSLNARFAEVECLAESHQHLSKESLAGNKP 631
AM+LNAR AEVECLAESHQHLSKESLAGNKP
Sbjct: 542 AMALNARLAEVECLAESHQHLSKESLAGNKP 572
>AF425231-1|AAL98962.1| 1954|Homo sapiens chromodomain helicase DNA
binding protein 5 protein.
Length = 1954
Score = 286 bits (702), Expect = 4e-77
Identities = 131/151 (86%), Positives = 141/151 (93%), Gaps = 1/151 (0%)
Frame = +2
Query: 182 KFMFNIADGGFTELHTLWLNEERAA-APGREYEIWHRRHDYWLLAGIVTHGYGRWQDIQN 358
KFMFNIADGGFTELHTLW NEERAA + G+ Y+IWHRRHDYWLLAGIVTHGY RWQDIQN
Sbjct: 1702 KFMFNIADGGFTELHTLWQNEERAAVSSGKIYDIWHRRHDYWLLAGIVTHGYARWQDIQN 1761
Query: 359 DLRFAIINEPFKMDVGKGNFLEIKNKFLARRFKLLEQALVIEEQLRRAAYLNLTQDPNHP 538
D R+ I+NEPFK +V KGN+LE+KNKFLARRFKLLEQALVIEEQLRRAAYLN+TQDPNHP
Sbjct: 1762 DPRYMILNEPFKSEVHKGNYLEMKNKFLARRFKLLEQALVIEEQLRRAAYLNMTQDPNHP 1821
Query: 539 AMSLNARFAEVECLAESHQHLSKESLAGNKP 631
AM+LNAR AEVECLAESHQHLSKESLAGNKP
Sbjct: 1822 AMALNARLAEVECLAESHQHLSKESLAGNKP 1852
>AB007913-1|BAA32289.1| 978|Homo sapiens KIAA0444 protein protein.
Length = 978
Score = 286 bits (702), Expect = 4e-77
Identities = 131/151 (86%), Positives = 141/151 (93%), Gaps = 1/151 (0%)
Frame = +2
Query: 182 KFMFNIADGGFTELHTLWLNEERAA-APGREYEIWHRRHDYWLLAGIVTHGYGRWQDIQN 358
KFMFNIADGGFTELHTLW NEERAA + G+ Y+IWHRRHDYWLLAGIVTHGY RWQDIQN
Sbjct: 726 KFMFNIADGGFTELHTLWQNEERAAVSSGKIYDIWHRRHDYWLLAGIVTHGYARWQDIQN 785
Query: 359 DLRFAIINEPFKMDVGKGNFLEIKNKFLARRFKLLEQALVIEEQLRRAAYLNLTQDPNHP 538
D R+ I+NEPFK +V KGN+LE+KNKFLARRFKLLEQALVIEEQLRRAAYLN+TQDPNHP
Sbjct: 786 DPRYMILNEPFKSEVHKGNYLEMKNKFLARRFKLLEQALVIEEQLRRAAYLNMTQDPNHP 845
Query: 539 AMSLNARFAEVECLAESHQHLSKESLAGNKP 631
AM+LNAR AEVECLAESHQHLSKESLAGNKP
Sbjct: 846 AMALNARLAEVECLAESHQHLSKESLAGNKP 876
>X86691-1|CAA60384.1| 1912|Homo sapiens Mi-2 protein protein.
Length = 1912
Score = 277 bits (679), Expect = 2e-74
Identities = 123/153 (80%), Positives = 142/153 (92%), Gaps = 1/153 (0%)
Frame = +2
Query: 176 RRKFMFNIADGGFTELHTLWLNEERAAAPGRE-YEIWHRRHDYWLLAGIVTHGYGRWQDI 352
+++FMFNIADGGFTELH+LW NEERAA ++ YEIWHRRHDYWLLAGI+ HGY RWQDI
Sbjct: 1693 KQRFMFNIADGGFTELHSLWQNEERAATVTKKTYEIWHRRHDYWLLAGIINHGYARWQDI 1752
Query: 353 QNDLRFAIINEPFKMDVGKGNFLEIKNKFLARRFKLLEQALVIEEQLRRAAYLNLTQDPN 532
QND R+AI+NEPFK ++ +GNFLEIKNKFLARRFKLLEQALVIEEQLRRAAYLN+++DP+
Sbjct: 1753 QNDPRYAILNEPFKGEMNRGNFLEIKNKFLARRFKLLEQALVIEEQLRRAAYLNMSEDPS 1812
Query: 533 HPAMSLNARFAEVECLAESHQHLSKESLAGNKP 631
HP+M+LN RFAEVECLAESHQHLSKES+AGNKP
Sbjct: 1813 HPSMALNTRFAEVECLAESHQHLSKESMAGNKP 1845
>U91543-1|AAC39923.1| 2000|Homo sapiens zinc-finger helicase protein.
Length = 2000
Score = 277 bits (679), Expect = 2e-74
Identities = 128/151 (84%), Positives = 138/151 (91%), Gaps = 1/151 (0%)
Frame = +2
Query: 182 KFMFNIADGGFTELHTLWLNEERAA-APGREYEIWHRRHDYWLLAGIVTHGYGRWQDIQN 358
+FMFNIADGGFTELHTLW NEERAA + G+ EIWHRRHDYWLLAGIV HGY RWQDIQN
Sbjct: 1706 RFMFNIADGGFTELHTLWQNEERAAISSGKLNEIWHRRHDYWLLAGIVLHGYARWQDIQN 1765
Query: 359 DLRFAIINEPFKMDVGKGNFLEIKNKFLARRFKLLEQALVIEEQLRRAAYLNLTQDPNHP 538
D +FAIINEPFK + KGNFLE+KNKFLARRFKLLEQALVIEEQLRRAAYLNL+Q+P HP
Sbjct: 1766 DAQFAIINEPFKTEANKGNFLEMKNKFLARRFKLLEQALVIEEQLRRAAYLNLSQEPAHP 1825
Query: 539 AMSLNARFAEVECLAESHQHLSKESLAGNKP 631
AM+L+ARFAE ECLAESHQHLSKESLAGNKP
Sbjct: 1826 AMALHARFAEAECLAESHQHLSKESLAGNKP 1856
>BC110648-1|AAI10649.1| 661|Homo sapiens CHD3 protein protein.
Length = 661
Score = 277 bits (679), Expect = 2e-74
Identities = 128/151 (84%), Positives = 138/151 (91%), Gaps = 1/151 (0%)
Frame = +2
Query: 182 KFMFNIADGGFTELHTLWLNEERAA-APGREYEIWHRRHDYWLLAGIVTHGYGRWQDIQN 358
+FMFNIADGGFTELHTLW NEERAA + G+ EIWHRRHDYWLLAGIV HGY RWQDIQN
Sbjct: 367 RFMFNIADGGFTELHTLWQNEERAAISSGKLNEIWHRRHDYWLLAGIVLHGYARWQDIQN 426
Query: 359 DLRFAIINEPFKMDVGKGNFLEIKNKFLARRFKLLEQALVIEEQLRRAAYLNLTQDPNHP 538
D +FAIINEPFK + KGNFLE+KNKFLARRFKLLEQALVIEEQLRRAAYLNL+Q+P HP
Sbjct: 427 DAQFAIINEPFKTEANKGNFLEMKNKFLARRFKLLEQALVIEEQLRRAAYLNLSQEPAHP 486
Query: 539 AMSLNARFAEVECLAESHQHLSKESLAGNKP 631
AM+L+ARFAE ECLAESHQHLSKESLAGNKP
Sbjct: 487 AMALHARFAEAECLAESHQHLSKESLAGNKP 517
>BC038596-1|AAH38596.1| 1937|Homo sapiens CHD4 protein protein.
Length = 1937
Score = 277 bits (679), Expect = 2e-74
Identities = 123/153 (80%), Positives = 142/153 (92%), Gaps = 1/153 (0%)
Frame = +2
Query: 176 RRKFMFNIADGGFTELHTLWLNEERAAAPGRE-YEIWHRRHDYWLLAGIVTHGYGRWQDI 352
+++FMFNIADGGFTELH+LW NEERAA ++ YEIWHRRHDYWLLAGI+ HGY RWQDI
Sbjct: 1718 KQRFMFNIADGGFTELHSLWQNEERAATVTKKTYEIWHRRHDYWLLAGIINHGYARWQDI 1777
Query: 353 QNDLRFAIINEPFKMDVGKGNFLEIKNKFLARRFKLLEQALVIEEQLRRAAYLNLTQDPN 532
QND R+AI+NEPFK ++ +GNFLEIKNKFLARRFKLLEQALVIEEQLRRAAYLN+++DP+
Sbjct: 1778 QNDPRYAILNEPFKGEMNRGNFLEIKNKFLARRFKLLEQALVIEEQLRRAAYLNMSEDPS 1837
Query: 533 HPAMSLNARFAEVECLAESHQHLSKESLAGNKP 631
HP+M+LN RFAEVECLAESHQHLSKES+AGNKP
Sbjct: 1838 HPSMALNTRFAEVECLAESHQHLSKESMAGNKP 1870
>AF006515-1|AAB87383.1| 1944|Homo sapiens CHD3 protein.
Length = 1944
Score = 277 bits (679), Expect = 2e-74
Identities = 128/151 (84%), Positives = 138/151 (91%), Gaps = 1/151 (0%)
Frame = +2
Query: 182 KFMFNIADGGFTELHTLWLNEERAA-APGREYEIWHRRHDYWLLAGIVTHGYGRWQDIQN 358
+FMFNIADGGFTELHTLW NEERAA + G+ EIWHRRHDYWLLAGIV HGY RWQDIQN
Sbjct: 1672 RFMFNIADGGFTELHTLWQNEERAAISSGKLNEIWHRRHDYWLLAGIVLHGYARWQDIQN 1731
Query: 359 DLRFAIINEPFKMDVGKGNFLEIKNKFLARRFKLLEQALVIEEQLRRAAYLNLTQDPNHP 538
D +FAIINEPFK + KGNFLE+KNKFLARRFKLLEQALVIEEQLRRAAYLNL+Q+P HP
Sbjct: 1732 DAQFAIINEPFKTEANKGNFLEMKNKFLARRFKLLEQALVIEEQLRRAAYLNLSQEPAHP 1791
Query: 539 AMSLNARFAEVECLAESHQHLSKESLAGNKP 631
AM+L+ARFAE ECLAESHQHLSKESLAGNKP
Sbjct: 1792 AMALHARFAEAECLAESHQHLSKESLAGNKP 1822
>AF006514-1|AAB87382.1| 1739|Homo sapiens CHD2 protein.
Length = 1739
Score = 33.1 bits (72), Expect = 0.83
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Frame = +2
Query: 281 WHRRHDYWLLAGIVTHGYGRWQDIQNDLRFAIINEPFKMDVGK---GNFLEIKNKFLARR 451
W D LL GI HGYG W+ I+ D + ++ ++ K G L+ + +L
Sbjct: 1261 WGVEDDSRLLLGIYEHGYGNWELIKTDPELKLTDKILPVETDKKPQGKQLQTRADYL--- 1317
Query: 452 FKLLEQAL 475
KLL + L
Sbjct: 1318 LKLLRKGL 1325
>BC117134-1|AAI17135.1| 1709|Homo sapiens chromodomain helicase DNA
binding protein 1 protein.
Length = 1709
Score = 30.3 bits (65), Expect = 5.9
Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 3/77 (3%)
Frame = +2
Query: 281 WHRRHDYWLLAGIVTHGYGRWQDIQNDLRFAIINEPFKMDVGK---GNFLEIKNKFLARR 451
W + D LL GI +GYG W+ I+ D ++ ++ D K L+ + +L
Sbjct: 1253 WGKEDDSNLLIGIYEYGYGSWEMIKMDPDLSLTHKILPDDPDKKPQAKQLQTRADYL--- 1309
Query: 452 FKLLEQALVIEEQLRRA 502
KLL + L +E L A
Sbjct: 1310 IKLLSRDLAKKEALSGA 1326
>AF006513-1|AAB87381.1| 1709|Homo sapiens CHD1 protein.
Length = 1709
Score = 30.3 bits (65), Expect = 5.9
Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 3/77 (3%)
Frame = +2
Query: 281 WHRRHDYWLLAGIVTHGYGRWQDIQNDLRFAIINEPFKMDVGK---GNFLEIKNKFLARR 451
W + D LL GI +GYG W+ I+ D ++ ++ D K L+ + +L
Sbjct: 1253 WGKEDDSNLLIGIYEYGYGSWEMIKMDPDLSLTHKILPDDPDKKPQAKQLQTRADYL--- 1309
Query: 452 FKLLEQALVIEEQLRRA 502
KLL + L +E L A
Sbjct: 1310 IKLLSRDLAKKEALSGA 1326
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 53,557,997
Number of Sequences: 237096
Number of extensions: 961947
Number of successful extensions: 2653
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 2568
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2641
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6860268620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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