Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_N13
         (631 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U55373-1|AAC25894.1| 1829|Caenorhabditis elegans Lethal protein ...   188   4e-48
AF308445-1|AAG29838.1| 1829|Caenorhabditis elegans LET-418 protein.   188   4e-48
Z67884-5|CAA91810.1| 1787|Caenorhabditis elegans Hypothetical pr...   187   7e-48
Z67881-4|CAA91798.1| 1787|Caenorhabditis elegans Hypothetical pr...   187   7e-48
AF308444-1|AAG29837.1| 1787|Caenorhabditis elegans CHD-3 protein.     187   7e-48
Z92970-2|CAB07481.2| 1461|Caenorhabditis elegans Hypothetical pr...    33   0.13 
Z82070-1|CAB04911.1|  210|Caenorhabditis elegans Hypothetical pr...    29   2.1  
AF125971-7|AAD14768.2|  519|Caenorhabditis elegans Hypothetical ...    29   3.6  
U80840-8|AAB37927.1|  235|Caenorhabditis elegans Hypothetical pr...    28   6.3  
Z70205-7|CAA94120.2|  996|Caenorhabditis elegans Hypothetical pr...    27   8.4  
AB054992-1|BAB62002.1|  996|Caenorhabditis elegans peroxin protein.    27   8.4  

>U55373-1|AAC25894.1| 1829|Caenorhabditis elegans Lethal protein 418
            protein.
          Length = 1829

 Score =  188 bits (457), Expect = 4e-48
 Identities = 91/155 (58%), Positives = 115/155 (74%), Gaps = 4/155 (2%)
 Frame = +2

Query: 176  RRKFMFNIADGGFTELHTLWLNEERAAAPGREYEIWHRRHDYWLLAGIVTHGYGRWQ--- 346
            R  F FNI DGGFTELH+LW NEE+ A  G+EYEIW+RRHDYWLLAG+V HGYGR+Q   
Sbjct: 1493 RPSFKFNICDGGFTELHSLWANEEKVARNGKEYEIWYRRHDYWLLAGVVVHGYGRFQANF 1552

Query: 347  -DIQNDLRFAIINEPFKMDVGKGNFLEIKNKFLARRFKLLEQALVIEEQLRRAAYLNLTQ 523
             DI ND RF+++NEPFK    +    +IK KF+ RRFKL+EQ+LVIEEQLRRAA+ N   
Sbjct: 1553 NDIINDPRFSVLNEPFKEVGAEATGSDIKAKFMQRRFKLIEQSLVIEEQLRRAAHANRHL 1612

Query: 524  DPNHPAMSLNARFAEVECLAESHQHLSKESLAGNK 628
             P++    L  RFA++E +AES  +++KES AGN+
Sbjct: 1613 QPDNVG-PLAQRFADLENIAESQANIAKESSAGNR 1646


>AF308445-1|AAG29838.1| 1829|Caenorhabditis elegans LET-418 protein.
          Length = 1829

 Score =  188 bits (457), Expect = 4e-48
 Identities = 91/155 (58%), Positives = 115/155 (74%), Gaps = 4/155 (2%)
 Frame = +2

Query: 176  RRKFMFNIADGGFTELHTLWLNEERAAAPGREYEIWHRRHDYWLLAGIVTHGYGRWQ--- 346
            R  F FNI DGGFTELH+LW NEE+ A  G+EYEIW+RRHDYWLLAG+V HGYGR+Q   
Sbjct: 1493 RPSFKFNICDGGFTELHSLWANEEKVARNGKEYEIWYRRHDYWLLAGVVVHGYGRFQANF 1552

Query: 347  -DIQNDLRFAIINEPFKMDVGKGNFLEIKNKFLARRFKLLEQALVIEEQLRRAAYLNLTQ 523
             DI ND RF+++NEPFK    +    +IK KF+ RRFKL+EQ+LVIEEQLRRAA+ N   
Sbjct: 1553 NDIINDPRFSVLNEPFKEVGAEATGSDIKAKFMQRRFKLIEQSLVIEEQLRRAAHANRHL 1612

Query: 524  DPNHPAMSLNARFAEVECLAESHQHLSKESLAGNK 628
             P++    L  RFA++E +AES  +++KES AGN+
Sbjct: 1613 QPDNVG-PLAQRFADLENIAESQANIAKESSAGNR 1646


>Z67884-5|CAA91810.1| 1787|Caenorhabditis elegans Hypothetical protein
            T14G8.1 protein.
          Length = 1787

 Score =  187 bits (455), Expect = 7e-48
 Identities = 88/157 (56%), Positives = 116/157 (73%), Gaps = 6/157 (3%)
 Frame = +2

Query: 176  RRKFMFNIADGGFTELHTLWLNEERAAAPGREYEIWHRRHDYWLLAGIVTHGYGRW---- 343
            R  + FNI DGG+TELH+LW+NEE+ A  G+EYEIWHRRHD+WLLA +  +GYGR+    
Sbjct: 1480 RLPYKFNICDGGYTELHSLWINEEKVARNGKEYEIWHRRHDFWLLAAVAVYGYGRYQINF 1539

Query: 344  QDIQNDLRFAIINEPFKMDVG--KGNFLEIKNKFLARRFKLLEQALVIEEQLRRAAYLNL 517
            QDI ND +F+I+NEPFK        NF ++KNKFLARRFKLLEQ+LVIEEQLRRAA++N 
Sbjct: 1540 QDIMNDPKFSIVNEPFKQTGADPATNFADVKNKFLARRFKLLEQSLVIEEQLRRAAHINK 1599

Query: 518  TQDPNHPAMSLNARFAEVECLAESHQHLSKESLAGNK 628
             Q P+     L   F+E+E  A++H ++++ES  GN+
Sbjct: 1600 QQSPDQVG-QLAQHFSELEHTADAHVNIARESNNGNR 1635


>Z67881-4|CAA91798.1| 1787|Caenorhabditis elegans Hypothetical protein
            T14G8.1 protein.
          Length = 1787

 Score =  187 bits (455), Expect = 7e-48
 Identities = 88/157 (56%), Positives = 116/157 (73%), Gaps = 6/157 (3%)
 Frame = +2

Query: 176  RRKFMFNIADGGFTELHTLWLNEERAAAPGREYEIWHRRHDYWLLAGIVTHGYGRW---- 343
            R  + FNI DGG+TELH+LW+NEE+ A  G+EYEIWHRRHD+WLLA +  +GYGR+    
Sbjct: 1480 RLPYKFNICDGGYTELHSLWINEEKVARNGKEYEIWHRRHDFWLLAAVAVYGYGRYQINF 1539

Query: 344  QDIQNDLRFAIINEPFKMDVG--KGNFLEIKNKFLARRFKLLEQALVIEEQLRRAAYLNL 517
            QDI ND +F+I+NEPFK        NF ++KNKFLARRFKLLEQ+LVIEEQLRRAA++N 
Sbjct: 1540 QDIMNDPKFSIVNEPFKQTGADPATNFADVKNKFLARRFKLLEQSLVIEEQLRRAAHINK 1599

Query: 518  TQDPNHPAMSLNARFAEVECLAESHQHLSKESLAGNK 628
             Q P+     L   F+E+E  A++H ++++ES  GN+
Sbjct: 1600 QQSPDQVG-QLAQHFSELEHTADAHVNIARESNNGNR 1635


>AF308444-1|AAG29837.1| 1787|Caenorhabditis elegans CHD-3 protein.
          Length = 1787

 Score =  187 bits (455), Expect = 7e-48
 Identities = 88/157 (56%), Positives = 116/157 (73%), Gaps = 6/157 (3%)
 Frame = +2

Query: 176  RRKFMFNIADGGFTELHTLWLNEERAAAPGREYEIWHRRHDYWLLAGIVTHGYGRW---- 343
            R  + FNI DGG+TELH+LW+NEE+ A  G+EYEIWHRRHD+WLLA +  +GYGR+    
Sbjct: 1480 RLPYKFNICDGGYTELHSLWINEEKVARNGKEYEIWHRRHDFWLLAAVAVYGYGRYQINF 1539

Query: 344  QDIQNDLRFAIINEPFKMDVG--KGNFLEIKNKFLARRFKLLEQALVIEEQLRRAAYLNL 517
            QDI ND +F+I+NEPFK        NF ++KNKFLARRFKLLEQ+LVIEEQLRRAA++N 
Sbjct: 1540 QDIMNDPKFSIVNEPFKQTGADPATNFADVKNKFLARRFKLLEQSLVIEEQLRRAAHINK 1599

Query: 518  TQDPNHPAMSLNARFAEVECLAESHQHLSKESLAGNK 628
             Q P+     L   F+E+E  A++H ++++ES  GN+
Sbjct: 1600 QQSPDQVG-QLAQHFSELEHTADAHVNIARESNNGNR 1635


>Z92970-2|CAB07481.2| 1461|Caenorhabditis elegans Hypothetical protein
            H06O01.2 protein.
          Length = 1461

 Score = 33.5 bits (73), Expect = 0.13
 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
 Frame = +2

Query: 281  WHRRHDYWLLAGIVTHGYGRWQDIQNDLRFAIINEPFKMDVGK---GNFLEIKNKFLAR 448
            W R  D  LL G+  +GYG W+ I+ D    + ++ F  D  K   G  L+++  +L +
Sbjct: 1156 WSRPDDSALLLGVWKYGYGSWEAIKMDPTLGLADKIFIKDKTKKPQGKNLQVRVDYLLK 1214


>Z82070-1|CAB04911.1|  210|Caenorhabditis elegans Hypothetical
           protein W04E12.1 protein.
          Length = 210

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = +2

Query: 377 INEPFKMDVGKGNFLEIKNKFLARRFKLLEQALVIEEQLRRAA 505
           +NE  K+D+G  NFL      +A +   +E A+ + E+L + A
Sbjct: 137 LNEGCKLDLGIANFLHFDELTVALKRFTVEDAVTVREKLLKTA 179


>AF125971-7|AAD14768.2|  519|Caenorhabditis elegans Hypothetical
           protein Y4C6B.6 protein.
          Length = 519

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 14/38 (36%), Positives = 16/38 (42%)
 Frame = -2

Query: 630 GLFPASDSLLRCWCDSARHSTSANRAFNDIAGWFGSWV 517
           G FPA    L  W   +R    AN    D+  W G WV
Sbjct: 365 GYFPADGPKLGSW---SRAEQYANDLIKDMGNWVGGWV 399


>U80840-8|AAB37927.1|  235|Caenorhabditis elegans Hypothetical
           protein F08D12.4 protein.
          Length = 235

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 26/101 (25%), Positives = 46/101 (45%), Gaps = 10/101 (9%)
 Frame = +2

Query: 239 NEERAAAPGREYEIW--HRRHDYWLLAGIVTHGYGRW----QDIQNDLRFA----IINEP 388
           NEERA A  R Y+I   + R   ++    V  G+G W    +D+   ++++     +   
Sbjct: 133 NEERAYATDRAYQIMKQNMRETLFVFPSNVRLGWGVWVDGVKDVAGQVKYSDTTLNLKLG 192

Query: 389 FKMDVGKGNFLEIKNKFLARRFKLLEQALVIEEQLRRAAYL 511
           +K D+G+ N++  K   +      + Q+      LR A YL
Sbjct: 193 YKWDIGQPNWVSRKQACVMLMVP-VNQSSRSNGSLRTAEYL 232


>Z70205-7|CAA94120.2|  996|Caenorhabditis elegans Hypothetical
           protein C11H1.4a protein.
          Length = 996

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
 Frame = +2

Query: 425 IKNKFLARRFKLLEQALVIEEQLRRAAY-----LNLTQDPNHPAMSLNARFAEVECLAES 589
           I+N+FL  + +L+ Q ++I   L    Y     LN+    N P M  N     V+ + E 
Sbjct: 125 IENEFL-NQIRLVSQNMIIPHFLSPGVYVQFRILNIVPASNKPVMLNNDTELHVQTVTEG 183

Query: 590 HQHLSKESLA 619
            Q+  K ++A
Sbjct: 184 SQNDEKATMA 193


>AB054992-1|BAB62002.1|  996|Caenorhabditis elegans peroxin protein.
          Length = 996

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
 Frame = +2

Query: 425 IKNKFLARRFKLLEQALVIEEQLRRAAY-----LNLTQDPNHPAMSLNARFAEVECLAES 589
           I+N+FL  + +L+ Q ++I   L    Y     LN+    N P M  N     V+ + E 
Sbjct: 125 IENEFL-NQIRLVSQNMIIPHFLSPGVYVQFRILNIVPASNKPVMLNNDTELHVQTVTEG 183

Query: 590 HQHLSKESLA 619
            Q+  K ++A
Sbjct: 184 SQNDEKATMA 193


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,209,315
Number of Sequences: 27780
Number of extensions: 138789
Number of successful extensions: 398
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 374
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 385
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1385109898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)