Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_N12
         (594 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch...   226   2e-60
SPBC11G11.03 |||60S acidic ribosomal protein |Schizosaccharomyce...    54   2e-08
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p...    28   1.2  
SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyce...    27   2.7  
SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomy...    25   8.3  
SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A |S...    25   8.3  
SPBC15D4.01c ||SPBC2D10.21c|kinesin-like protein|Schizosaccharom...    25   8.3  
SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal binuc...    25   8.3  
SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyce...    25   8.3  

>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 312

 Score =  226 bits (552), Expect = 2e-60
 Identities = 106/185 (57%), Positives = 138/185 (74%)
 Frame = +1

Query: 40  KSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTMMRKAIKDHL 219
           K+ YF K+  L ++Y   F+V  DNV SQQM  +R  LRG + ++MGKNTM+R+A++  +
Sbjct: 8   KAQYFEKLRSLFEKYNSLFVVNIDNVSSQQMHTVRKQLRGTAELIMGKNTMIRRAMRGII 67

Query: 220 ETNPALEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAIAPLSVVIPAHNTG 399
              P LE+LLP ++GNVGFVFT  DL +VR+ ++ N + APARP AIAPL V +PA NTG
Sbjct: 68  NDMPELERLLPVVRGNVGFVFTNADLKEVRETIIANVIAAPARPNAIAPLDVFVPAGNTG 127

Query: 400 LGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNMLNISPFSYGLVV 579
           + P KTSFFQAL IPTKI++GTIEI +DVH++    KVG SEATLLNMLNISPF+YG+ V
Sbjct: 128 MEPGKTSFFQALGIPTKITRGTIEITSDVHLVSKDAKVGPSEATLLNMLNISPFTYGMDV 187

Query: 580 KQVYD 594
             +YD
Sbjct: 188 LTIYD 192


>SPBC11G11.03 |||60S acidic ribosomal protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 241

 Score = 54.0 bits (124), Expect = 2e-08
 Identities = 54/197 (27%), Positives = 89/197 (45%), Gaps = 18/197 (9%)
 Frame = +1

Query: 40  KSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTMMRKAIKDHL 219
           K+  F  + Q LD +   +I    N+ +  +++IR   +G S + MGK  +M KA+    
Sbjct: 23  KAALFSGVQQSLDSFDYMWIFDVTNMRNTYLKRIRDDWKG-SRIFMGKTKVMAKALGHTP 81

Query: 220 ETNPA--LEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAP-ARPGAIAPLSVVIPA- 387
           E   A  + KL   + G VG +FT     +V     E+ VQ   AR GA+AP + VIPA 
Sbjct: 82  EEEHAENVSKLTKLLHGAVGLLFTNSKPDEVIG-YFESFVQNDFARAGAVAPFTHVIPAG 140

Query: 388 ---HNTGLGPEKTSFF---------QALSIPTKISKGTIEIINDVHILKPGDKVGASEAT 531
                 G  P +             + L +PT +  G + ++ D  +   G ++ + +  
Sbjct: 141 PVYSRAGQIPVEDDILLTHTLEPQVRQLGMPTVLKNGVVTLLADFPLCTEGQQLDSRQTR 200

Query: 532 LLNMLNI--SPFSYGLV 576
           LL +  I  + F  GL+
Sbjct: 201 LLKLFGITAAEFKVGLL 217


>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 728

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -2

Query: 476 IISIVPFEILVGMERAWKKEVFSGPRPVL*AGMTTDNGAMAP 351
           IIS  P + L+G+  AW  E  S  R  +    T+    +AP
Sbjct: 289 IISFTPAKYLIGIGAAWFSEKLSRERKSISVDKTSKRAILAP 330


>SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 506

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -2

Query: 587 TCLTTRPYEKGEMFNMLRRVASEAP 513
           + LT  PYEKGE  N +R   S  P
Sbjct: 279 SALTRLPYEKGEFINFVRYHPSITP 303


>SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 421

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = -2

Query: 410 SGPRPVL*AGMTTDNGAMAPGRAGAWTLFSNSLSRTSTRSPRV 282
           +G  PV    +  + G++ P  AGAW L  N L    T   ++
Sbjct: 138 NGGVPVYVPIIPPEEGSVKPVSAGAWKLDMNKLRNAITEKTKM 180


>SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 660

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = +1

Query: 166 IVLMGKNTMMRKAIKDHLETNPALEKLLPHIKGNVGFVFTRGDLV 300
           I L+G N ++     DH++ +P ++   P+I      V ++GDLV
Sbjct: 401 IPLLGMNKVILAG--DHMQLSPNVQSKRPYISMFERLVKSQGDLV 443


>SPBC15D4.01c ||SPBC2D10.21c|kinesin-like
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 633

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 160 HSIVLMGKNTMMRKAIKDHLE 222
           HS++   KNT   KA+  HLE
Sbjct: 408 HSLLQKSKNTSSTKALTSHLE 428


>SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal
           binuclear cluster type |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 522

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +3

Query: 186 HHDEESHQGPS*NKSSSRKTASSHQG 263
           HH+ +     S   S+SRK A SH G
Sbjct: 431 HHNNDKRAHVSRRHSTSRKIAQSHTG 456


>SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 496

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -1

Query: 591 VHLFDNKTIRKGRDVQHVEK 532
           V L D   +RKG DVQ +EK
Sbjct: 289 VLLSDTAGLRKGEDVQEIEK 308


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,727,807
Number of Sequences: 5004
Number of extensions: 57345
Number of successful extensions: 190
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)