Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_N11
(479 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual 26 2.6
SPAC10F6.15 |||S. pombe specific UPF0300 family protein 1|Schizo... 26 3.4
SPCC1906.03 |wtf19||wtf element Wtf19|Schizosaccharomyces pombe|... 25 5.9
SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 5.9
SPCC1620.02 |wtf23||wtf element Wtf23|Schizosaccharomyces pombe|... 25 5.9
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|... 25 5.9
SPAC17C9.08 |pnu1|nuc1, end1|endodeoxyribonuclease Pnu1|Schizosa... 25 7.8
SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr... 25 7.8
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo... 25 7.8
SPAC1952.07 |rad1||checkpoint clamp complex protein Rad1|Schizos... 25 7.8
>SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual
Length = 935
Score = 26.2 bits (55), Expect = 2.6
Identities = 27/109 (24%), Positives = 47/109 (43%), Gaps = 3/109 (2%)
Frame = +2
Query: 11 STDARDFAKA*MSALTEDDWTQEKYIQLIRQFRARPMLWDQLNPLYYKKRVQSGAWENIA 190
S++ DF+ + + D+W ++ +L+ Q LWD L+ + + I
Sbjct: 167 SSELEDFSS---NGIVLDEWVFDRLDELLAQSLEDKELWDMLHRDKIVFFLHLLGIDTIG 223
Query: 191 HVLNNNPKECTRKMNRILLRFKIEETKLIETMT---NKSGDSTLKFTSD 328
H N +P N + KI+E L++ M N G S+ FT+D
Sbjct: 224 H--NKHPDSVEYVENIQYIDGKIQE--LVDKMNNYYNNDGASSWVFTAD 268
>SPAC10F6.15 |||S. pombe specific UPF0300 family protein
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 432
Score = 25.8 bits (54), Expect = 3.4
Identities = 11/43 (25%), Positives = 22/43 (51%)
Frame = +2
Query: 146 YYKKRVQSGAWENIAHVLNNNPKECTRKMNRILLRFKIEETKL 274
YY K +Q W + H +NN+ E + ++ ++ KI ++
Sbjct: 182 YYPKSLQEALWAAVEHYVNNS-GEAYSTVQKLAVQKKIGNIRM 223
>SPCC1906.03 |wtf19||wtf element Wtf19|Schizosaccharomyces pombe|chr
3|||Manual
Length = 393
Score = 25.0 bits (52), Expect = 5.9
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
Frame = -3
Query: 96 ISCIYFSCVQSSSVN---ALIYAFAKSRASVL 10
I CI F CV+S +N ALIY+ A +L
Sbjct: 245 ICCILFGCVKSGDLNLNKALIYSTCTISAVLL 276
>SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 682
Score = 25.0 bits (52), Expect = 5.9
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -2
Query: 274 KFCFFYFES*QYTVHFSCTFFGVVIEN 194
KFCFF S + V F +FF + N
Sbjct: 2 KFCFFVSLSFWFAVLFGISFFSSTLSN 28
>SPCC1620.02 |wtf23||wtf element Wtf23|Schizosaccharomyces pombe|chr
3|||Manual
Length = 368
Score = 25.0 bits (52), Expect = 5.9
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
Frame = -3
Query: 96 ISCIYFSCVQSSSVN---ALIYAFAKSRASVL 10
I CI F CV+S +N ALIY+ A +L
Sbjct: 212 ICCILFGCVKSGDLNLNKALIYSTCTISAVLL 243
>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 732
Score = 25.0 bits (52), Expect = 5.9
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +3
Query: 96 FVSLEQGPCYGIN*IRCTTRKEFNRARGKISRTFSITTP 212
F + E+G YGI I+ + + N R ++ R SI P
Sbjct: 675 FWTNERGEVYGILHIQVSIDGDLNVVRNEVFRKLSIAVP 713
>SPAC17C9.08 |pnu1|nuc1, end1|endodeoxyribonuclease
Pnu1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 24.6 bits (51), Expect = 7.8
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = +2
Query: 140 PLYYKKRVQSGAWENIAHVLNNNP 211
PLY K+ + G WE V+ N P
Sbjct: 201 PLYLPKKNERGQWEVQYRVIGNPP 224
>SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 661
Score = 24.6 bits (51), Expect = 7.8
Identities = 10/22 (45%), Positives = 17/22 (77%)
Frame = -1
Query: 89 VYTSPASNRLLLMHSFMLLQSR 24
V+ P S+RLL++HS +LQ++
Sbjct: 391 VFGKPLSSRLLMIHSPPILQNQ 412
>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
Swr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1288
Score = 24.6 bits (51), Expect = 7.8
Identities = 8/21 (38%), Positives = 15/21 (71%)
Frame = +2
Query: 314 KFTSDWFAFKEMAFMFDIDAE 376
+FT++WF ++ +FD+D E
Sbjct: 1143 EFTTEWFRKADVLDLFDLDDE 1163
>SPAC1952.07 |rad1||checkpoint clamp complex protein
Rad1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 323
Score = 24.6 bits (51), Expect = 7.8
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = +2
Query: 212 KECTRKMNRILLRFKIEETKLIE--TMTNKSGDSTLKFTSD 328
KECT ++ LRF +EE++ ++ +KS T F D
Sbjct: 23 KECTIEITSRGLRFAVEESQSLQAHAFLDKSLFQTFNFQGD 63
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,025,609
Number of Sequences: 5004
Number of extensions: 41201
Number of successful extensions: 108
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 184020746
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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