Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_N11
         (479 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0364 - 16791774-16792490,16792545-16793561,16793856-167939...    29   2.0  
11_04_0372 + 16915047-16915406,16915493-16916341                       29   2.6  

>11_04_0364 -
           16791774-16792490,16792545-16793561,16793856-16793920,
           16794787-16796964,16797065-16797322,16799815-16800172
          Length = 1530

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +2

Query: 221 TRKMNRILLRFKIEET-KLIETMTNKSGDSTLKFTSDWFAFKEMAFMFD 364
           T K+  I++  + E   KL++TM N    + L     W  FK++AF  D
Sbjct: 271 TAKLCMIIVTTRSERVAKLVQTMPNFYSLNCLSSEESWSLFKQVAFTVD 319


>11_04_0372 + 16915047-16915406,16915493-16916341
          Length = 402

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
 Frame = +2

Query: 221 TRKMNRILLRFKIEET-KLIETMTNKSGDSTLKFTSDWFAFKEMAFMFDIDAERKRQSEG 397
           T K+  I++  + E+  KL++TM+N      L F   W  F+++A    ++ E    +  
Sbjct: 319 TTKLCMIVVTTRSEKVAKLVQTMSNFYNLECLSFDESWLLFRQVA--LTVNQENAPPNLV 376

Query: 398 LIGEDQ*RVCK 430
            IG+   R CK
Sbjct: 377 EIGKAIVRKCK 387


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,156,645
Number of Sequences: 37544
Number of extensions: 231635
Number of successful extensions: 468
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 463
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 468
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 991020332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)