Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_N10
         (518 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   2.5  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   4.3  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   5.7  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +3

Query: 231  AARLRLCSHRRNHGLVHRSRSTSSVRPSGLNMMNRTYFV 347
            AA LRLC H R+   V R+ + + V    ++   R   V
Sbjct: 1092 AAGLRLCLHHRDLPCVLRASTPAPVVLEAVHASRRVLIV 1130


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -1

Query: 491 LSVPGFLFFLYPSSTL 444
           +S PG  F +YPS+ L
Sbjct: 353 VSGPGLAFLVYPSAVL 368


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -1

Query: 488 SVPGFLFFLYPSSTL 444
           S PG  F +YPS+ L
Sbjct: 407 SGPGLAFLVYPSAVL 421


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,288
Number of Sequences: 438
Number of extensions: 3328
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14477538
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)