Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_N08
         (377 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15E1.03 |rpl36a||60S ribosomal protein L36/L42|Schizosacchar...   118   2e-28
SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity fac...    27   0.98 
SPBC1604.21c |ptr3|uba1, SPBC211.09|ubiquitin activating enzyme ...    25   5.2  
SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|...    24   6.9  
SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    24   6.9  
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc...    24   6.9  

>SPAC15E1.03 |rpl36a||60S ribosomal protein
           L36/L42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 106

 Score =  118 bits (285), Expect = 2e-28
 Identities = 54/104 (51%), Positives = 67/104 (64%), Gaps = 2/104 (1%)
 Frame = +1

Query: 25  NVPKQRRTY--XXXXXXXXXXXXSQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIFXXXX 198
           N+PK R+TY              +QYKK  +   AQG+RRYDRKQ G+GGQ+KP+F    
Sbjct: 3   NIPKTRKTYCPGKNCRKHTVHRVTQYKKGPDSKLAQGKRRYDRKQSGFGGQTKPVFHKKA 62

Query: 199 XXXXXIVLRLECADCKVRSQVALKRCKHFELGGDKKRKGQMIQF 330
                +VLRLEC  CK ++Q+ LKRCKHFELGG+KK KG  IQF
Sbjct: 63  KVTKKVVLRLECVSCKYKNQLVLKRCKHFELGGEKKTKGAAIQF 106


>SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity factor
           complex subunit, Fip1 homolog |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 344

 Score = 27.1 bits (57), Expect = 0.98
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -2

Query: 313 PSSSCHHQAQSAYNASGPPVTSPCSLHIP 227
           P+SS  + A + YNAS PP   P S + P
Sbjct: 287 PTSSYGNGASTNYNASRPPSNHPHSSNYP 315


>SPBC1604.21c |ptr3|uba1, SPBC211.09|ubiquitin activating enzyme
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1012

 Score = 24.6 bits (51), Expect = 5.2
 Identities = 11/36 (30%), Positives = 15/36 (41%)
 Frame = +2

Query: 26  TYPNSAEHTAKNANVTKFTKCLSTKSLRKGTPLRAE 133
           T      H  +N +  KFT+      L  GTP + E
Sbjct: 195 TMLEETRHGLENGDFVKFTEVKGMPGLNDGTPRKVE 230


>SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 822

 Score = 24.2 bits (50), Expect = 6.9
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = -1

Query: 320 ICPFLFLSPPSSKCLQRFRATCDLTLQSAHSRRSTIFFVVFAFFL 186
           +C F    P  S  +QRFR+ C   L    S    IF V F+ F+
Sbjct: 554 VCGFNIYFPLMSPWIQRFRSRCCFRLGLLFS----IFVVGFSSFI 594


>SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 357

 Score = 24.2 bits (50), Expect = 6.9
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = -2

Query: 103 TFCTETLCELCDICIFCSMFCAVWVRFHFYVCLV 2
           T+  ET C      I C++ C++ V   + +C V
Sbjct: 30  TYLVETFCFFRRWKIACTLLCSITVILAYRMCAV 63


>SPBC4C3.12 |sep1||fork head transcription factor
           Sep1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 663

 Score = 24.2 bits (50), Expect = 6.9
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -2

Query: 286 QSAYNASGPPVTSPCSLHIPDE 221
           QS  N+  PP++SP S   P E
Sbjct: 328 QSCTNSPSPPLSSPASSASPSE 349


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,281,909
Number of Sequences: 5004
Number of extensions: 21487
Number of successful extensions: 54
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 122233080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)